Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59540 852 / 0 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G10180 431 / 1e-133 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 283 / 1e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G06670 278 / 5e-80 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G21380 278 / 2e-79 Kinesin motor family protein (.1) AT4G39050 274 / 4e-78 Kinesin motor family protein (.1) AT1G21730 269 / 4e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G21300 258 / 3e-73 ATP binding microtubule motor family protein (.1.2) AT3G43210 258 / 5e-73 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT4G38950 252 / 2e-71 ATP binding microtubule motor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007725 [exp] 1528 / 0 AT1G59540 906 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010441 [exp] 424 / 3e-132 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012103 [exp] 425 / 2e-131 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041958 [exp] 283 / 1e-81 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017969 [exp] 282 / 8e-81 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10015448 [exp] 264 / 7e-79 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10005181 [exp] 274 / 1e-78 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Lus10018145 [exp] 273 / 4e-77 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025688 [exp] 270 / 4e-76 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G013300 [exp] 1001 / 0 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G040700 [exp] 436 / 1e-135 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G161100 [exp] 287 / 1e-82 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.009G122100 [exp] 283 / 4e-81 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.006G136600 [exp] 280 / 7e-81 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.016G060400 [exp] 281 / 1e-80 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G194900 [exp] 276 / 5e-79 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G081300 [exp] 277 / 8e-79 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G014800 [exp] 257 / 2e-72 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.015G044600 [exp] 254 / 1e-71 AT1G18370 1518 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10018661 pacid=23176170 polypeptide=Lus10018661 locus=Lus10018661.g ID=Lus10018661.BGIv1.0 annot-version=v1.0 ATGGAGAAGATCTGCGTTGCTGTCAGAGTGAGGCCGCCGGTAGCTTCATCTCCTCTCGATACAACTTCCGGAGGAACTTACTGGTTAACCGAAGACAATC GCATCTCACTTCACAGGTCCGGTGGTACTCCCATCTCCGGGGTGTCTTATGCTTTCGATCACGTGTTTGATCAAGCTTCCTCCAACTCCAGGGTTTACGA GCTACTCACTAAGGATATCATTGATGCCGCTGTTAAAGGTTTCAACGGTGAGCTAGCTCTTGAACCGGTTTGCCCTTCTCTCCGAAAATTAGGAACTGCG TTTGCTTATGGACAGACGAGCAGTGGCAAGACGTTCACCATGAACGGATCAGAAAAGGATCCGGGAATCATTCACAGGGCAGTGCGAGACATTTTTGACA AAATACAAGCTATATCTGATAGGGAGTTTCTAATTAGAGTTTCCTATATGGAAATCTATAATGAAGAAATCAATGACCTCTTTGCTGTAGAGAACCAAAA GTTGCCTATACATGAGAGTTTGGAGAGAGGCATATTTGTTGCTGGCCTCAGAGAGGAAATTGTGAATAGCGCTGAACAAGTTCTTAAGCTCATGGAATCA GGAGAAGTCAACAGACACTTCGGGGAAACAAACATGAATGCTCGGAGCAGTAGATCTCACACAATATTCAGGATGGTGATCGAGAGTAAGGGGAAAGTGA CAAACTCTTCAAGCGTTTATTCAAGTAGTGATGCTGTTCGAGTCTCTGTCTTGAATTTGGTCGATTTAGCTGGTTCAGAAAGAATTGCCAAAACAGGAGC GGGGGGTGTGCGTTTGAAAGAAGGAAAATACATTAACAAGAGTCTGATGGTTCTTGGTAATGTCATAAACAAACTAAGTGATGGTGGAAAGCAAAGGGCA CATATACCTTATCGTGACAGTAAACTAACTCGTATACTTCAACCTGCTCTTGGTGGTAATGCCAAAACTTCAATTATTTGCACCCTTGCTCCAGAAGAGA TTCACGTTGAGGAAACTAAAGGAACTCTCTTGTTTGCCAGCCGAGCCAAACGCATAACGAATTGTGTTCAAGTGAATGAGATTTTAACTGATGCTGCCTT ACTGAAGCGACAGAAATTAGAAATAGAAGAGCTCCGAAAGAAACTTCAGGGATCTCATGCTGAAGTTCTGGAGCAAGAAATTCTGAACTTACGAAATGGG ATGCTGAAGTACGAGCTAGAGAGGGAGAAACTTGAAACGCAGCTCGAAGAAGAGAGGAAGTCGCAGAAGGAAAGAGAACAACGTATTAGGGAGCAACAAA TGAAAATTGATAACCTAAGTAATATTGTCACCTCTGGAGAGTGTGATAGGAGCTCTGGCCAGGGGCCGAGTGGCGGTACATCAAGCCTAGTTGAACAATT CAGTGATAACAGCGGTGCTTTCCAAGCGGATTTGTATAGAACACCTAGCTTCAAGGCCACTCCTAATGCATTTGTCTCAAAAAGGTCCAACAATGTGAGG CTACCTGACTTCAGTCCTCTCCCAGAAACTTTGAGCAATGTGGCTGATGAAGACACCTGGATGAAATTAAATCATGGTTTCACCGTTGATTTTGATTCAA TTCATATGACCCCGGCTAGAAAAGTCCAGTCCTTTCCGGAAAACAACGTCACTCCTGGATATTCTCGTGAGAAGTACAGACTAGAGGTCCAAGATCTAAG AACAGAGCTGCAACTTGTCACTGTGGAGAAGAATGAAATCAAGGAGAAGAACTCGGAACTCTTGCTTCTCAACGATCGTTTGATGCATGAAAAATCCGAG CTTGAACAAAAACTAGATTTATTTAGTCGAATCCCTCAGAATTTTCTCAAGTATATTGCAAGTTCAGTTGACATCTACGAAGAAGCTTATTCGACATTAC AGAGTTGCGCGCGGGAGACGGAAGCTTCAACAGCAAGATTGCTCTCCGGAACAAGAGAAATAGGTAAAACCGTGTTGTCAAATCTGGAAAGCTACATCTC TCGACCAATGGATGATTCTGCAGTGGAAGAAGAGTTGAAAATCCTTTCCGAGAGGTCAAAAGCCGTAGTTACATCATTAGCATCATCAGAAGCCTTCAAG TTACAGAGTCGAGAGAAGGAAAACGAGTCTAAGGGATGCTGCACTGTGGCTGGACAAACTGCGGCAAATGACAAGAAAGAATTGGAGAGTGAGCTCAAGA GAATCAAGGAGAAACATGACGAAGTGGTGACAACGCTGGAGCAGAACAGCAAGCTTCTGAAGGTTTCTAGAGATAAGTACAGCAGGCTGGAAAGAGATGT ACAGATTCTGAATGAAGAGAGGGGATCGCTTGTCCATAGAGTCTCAGAACTACGTGGAAAGCTTGATGCAGCTAACGACGAGAAGGAAAACGCGGTGCAG GACTTGAACTCGGAAGCACGCAGAAGGAGAAACCTGGAAGCTGAGATTAAACAGTTGAGTGTTGCCTTTGCTGGTCGGCAGAAGTCGTTCGTAGCTTTTG ATAGTGAGTTTAAAGCCAAAATGGAGCAACTGAGATCTCTTCTCCAGTCAGGTCCGCTATCCAAACCTCTTGGATTATTGAATTCCTGA
AA sequence Show only first row Show all	>Lus10018661 pacid=23176170 polypeptide=Lus10018661 locus=Lus10018661.g ID=Lus10018661.BGIv1.0 annot-version=v1.0 MEKICVAVRVRPPVASSPLDTTSGGTYWLTEDNRISLHRSGGTPISGVSYAFDHVFDQASSNSRVYELLTKDIIDAAVKGFNGELALEPVCPSLRKLGTA FAYGQTSSGKTFTMNGSEKDPGIIHRAVRDIFDKIQAISDREFLIRVSYMEIYNEEINDLFAVENQKLPIHESLERGIFVAGLREEIVNSAEQVLKLMES GEVNRHFGETNMNARSSRSHTIFRMVIESKGKVTNSSSVYSSSDAVRVSVLNLVDLAGSERIAKTGAGGVRLKEGKYINKSLMVLGNVINKLSDGGKQRA HIPYRDSKLTRILQPALGGNAKTSIICTLAPEEIHVEETKGTLLFASRAKRITNCVQVNEILTDAALLKRQKLEIEELRKKLQGSHAEVLEQEILNLRNG MLKYELEREKLETQLEEERKSQKEREQRIREQQMKIDNLSNIVTSGECDRSSGQGPSGGTSSLVEQFSDNSGAFQADLYRTPSFKATPNAFVSKRSNNVR LPDFSPLPETLSNVADEDTWMKLNHGFTVDFDSIHMTPARKVQSFPENNVTPGYSREKYRLEVQDLRTELQLVTVEKNEIKEKNSELLLLNDRLMHEKSE LEQKLDLFSRIPQNFLKYIASSVDIYEEAYSTLQSCARETEASTARLLSGTREIGKTVLSNLESYISRPMDDSAVEEELKILSERSKAVVTSLASSEAFK LQSREKENESKGCCTVAGQTAANDKKELESELKRIKEKHDEVVTTLEQNSKLLKVSRDKYSRLERDVQILNEERGSLVHRVSELRGKLDAANDEKENAVQ DLNSEARRRRNLEAEIKQLSVAFAGRQKSFVAFDSEFKAKMEQLRSLLQSGPLSKPLGLLNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10018661 [exp]	0	1
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	1.4	0.9836
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10005240 [exp]	2.0	0.9801
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10007725 [exp]	2.0	0.9773
AT3G44050			P-loop containing nucleoside t...		Lus10013377 [exp]	3.3	0.9661
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027933 [exp]	3.5	0.9710
AT2G07170			ARM repeat superfamily protein...		Lus10027590 [exp]	3.5	0.9778
AT2G04235			unknown protein		Lus10016054 [exp]	5.7	0.9698
AT2G20635			ATP binding;protein kinases;pr...		Lus10017714 [exp]	7.5	0.9699
AT2G36200			P-loop containing nucleoside t...		Lus10021340 [exp]	7.9	0.9697
AT2G22610			Di-glucose binding protein wit...		Lus10025708 [exp]	8.1	0.9714

Compare expression of checked genes

Lus10018661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.