Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49760 72 / 1e-16 bZIP ATBZIP5 basic leucine-zipper 5 (.1) AT1G59530 69 / 2e-15 bZIP ATBZIP4 basic leucine-zipper 4 (.1) AT4G37730 70 / 6e-15 bZIP ATBZIP7 basic leucine-zipper 7 (.1) AT2G22850 66 / 8e-14 bZIP ATBZIP6 basic leucine-zipper 6 (.1.2) AT2G04038 60 / 5e-12 bZIP ATBZIP48 basic leucine-zipper 48 (.1) AT3G30530 60 / 5e-12 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT5G15830 61 / 6e-12 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT1G75390 60 / 7e-12 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT1G13600 60 / 1e-11 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT2G18160 56 / 3e-10 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007726 [exp] 231 / 2e-79 AT3G49760 84 / 3e-21 basic leucine-zipper 5 (.1) Lus10011722 [exp] 83 / 3e-20 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10011557 [exp] 72 / 1e-16 AT3G49760 87 / 9e-23 basic leucine-zipper 5 (.1) Lus10019273 [exp] 67 / 3e-14 AT2G22850 94 / 2e-23 basic leucine-zipper 6 (.1.2) Lus10024279 [exp] 64 / 2e-13 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10029101 [exp] 65 / 3e-13 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10013059 [exp] 63 / 1e-12 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10041780 [exp] 60 / 8e-12 AT1G75390 135 / 2e-40 basic leucine-zipper 44 (.1.2) Lus10001347 [exp] 59 / 1e-11 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G115900 [exp] 121 / 6e-36 AT1G59530 76 / 5e-18 basic leucine-zipper 4 (.1) Potri.014G013400 [exp] 113 / 9e-33 AT1G59530 77 / 8e-19 basic leucine-zipper 4 (.1) Potri.007G006900 [exp] 80 / 3e-19 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.014G007100 [exp] 78 / 1e-18 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1) Potri.008G113400 [exp] 66 / 8e-14 AT1G13600 139 / 2e-41 basic leucine-zipper 58 (.1) Potri.010G135200 [exp] 66 / 1e-13 AT3G30530 131 / 2e-38 basic leucine-zipper 42 (.1) Potri.005G119300 [exp] 61 / 2e-12 AT2G18160 130 / 3e-39 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) Potri.009G119700 [exp] 60 / 6e-12 AT4G34590 154 / 9e-49 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) Potri.005G231300 [exp] 59 / 1e-11 AT1G75390 172 / 2e-55 basic leucine-zipper 44 (.1.2) Potri.004G158200 [exp] 59 / 1e-11 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10018662 pacid=23176260 polypeptide=Lus10018662 locus=Lus10018662.g ID=Lus10018662.BGIv1.0 annot-version=v1.0 ATGTTTGGAACGACCGAACTCGATTGCCCGGTTCATATCGAGCAGGGATTCACAGCCCACGATCTAGAAAACCTCTTGTCCATCTTCGACTCCCAAACCG CCGGTAGCCCTAATAACTCAAACTCCGGTTCGGAAGGGTGGTCAAACCGCTCGGTGGATGAGAGAAAGGAGAGACGGATGAAATCGAACCGGGAGTCAGC CCGACGATCGCGGTGGAGAAAAAAGAGGCATTTGGAGAAGCTGACCGAGCAAGCCAAACGGTTGAAAATGGAGAACCAGGAGCTCAAGTACATGTTGGGT TCGACGTTGAGCCAGTGCCACGTAGTCAGGAGGGACAACCAACGGCTGAGATCGGAGTCGGTAGCTCTTCGTGGGAGGCTCGCTCATTTGTGTCACACTC TGCTTGCCATGCACGGCCATGCAGTTAATAATTAA
AA sequence Show only first row Show all	>Lus10018662 pacid=23176260 polypeptide=Lus10018662 locus=Lus10018662.g ID=Lus10018662.BGIv1.0 annot-version=v1.0 MFGTTELDCPVHIEQGFTAHDLENLLSIFDSQTAGSPNNSNSGSEGWSNRSVDERKERRMKSNRESARRSRWRKKRHLEKLTEQAKRLKMENQELKYMLG STLSQCHVVRRDNQRLRSESVALRGRLAHLCHTLLAMHGHAVNN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10018662 [exp]	0	1
					Lus10023424 [exp]	1.4	0.8765
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10040305 [exp]	2.0	0.8574
AT3G44716			unknown protein		Lus10009406 [exp]	5.3	0.7901
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10010666 [exp]	6.2	0.7709
					Lus10003607 [exp]	7.4	0.8044
AT4G27590			Heavy metal transport/detoxifi...		Lus10032924 [exp]	8.9	0.7811
AT3G14880			unknown protein		Lus10039193 [exp]	9.5	0.7947
AT5G44005			unknown protein		Lus10008219 [exp]	13.0	0.7393
AT2G46640			unknown protein		Lus10005993 [exp]	14.0	0.8058
AT4G29110			unknown protein		Lus10014153 [exp]	14.4	0.8128

Compare expression of checked genes

Lus10018662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.