Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10150 342 / 2e-116 ATPP2-A10 Carbohydrate-binding protein (.1) AT1G59510 311 / 9e-105 CF9 Carbohydrate-binding protein (.1) AT3G49790 253 / 2e-82 Carbohydrate-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007727 [exp] 577 / 0 AT1G10150 429 / 1e-149 Carbohydrate-binding protein (.1) Lus10003785 [exp] 430 / 3e-151 AT1G10150 447 / 1e-156 Carbohydrate-binding protein (.1) Lus10012487 [exp] 429 / 6e-151 AT1G10150 439 / 2e-153 Carbohydrate-binding protein (.1) Lus10039651 [exp] 245 / 6e-79 AT1G10150 298 / 2e-98 Carbohydrate-binding protein (.1) Lus10011718 [exp] 234 / 7e-75 AT1G10150 288 / 2e-94 Carbohydrate-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G116400 [exp] 365 / 2e-125 AT1G10150 387 / 1e-132 Carbohydrate-binding protein (.1) Potri.014G014100 [exp] 346 / 3e-118 AT1G10150 401 / 3e-138 Carbohydrate-binding protein (.1) Potri.007G006600 [exp] 319 / 3e-107 AT1G10150 355 / 8e-120 Carbohydrate-binding protein (.1) Potri.014G006800 [exp] 289 / 1e-95 AT1G10150 350 / 5e-118 Carbohydrate-binding protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018663 pacid=23176226 polypeptide=Lus10018663 locus=Lus10018663.g ID=Lus10018663.BGIv1.0 annot-version=v1.0 ATGGATCTTGGATTGGTGAAGGCAAAAGGGTTGGGACTGTACAGGCGGAGAAAGAAGTGGCTGTTTTTGGCCGGAGTTATCGGCCTCTCCAGTTACAGCG CTTACAAGGTTTATAACTTGCCTCCCGTCGCTAAGAAGCGGCGGAAGCTGATGAAACTCGCCGGAGCTTTGGCTTCCGTTGCTGAGATGGTGTCTGATTC CGCCAAGACGATGGGTGTCGTTTCTAAGGATATGAAAGAGTTTGTAATGTCCGATTCTGACGAAATCCCCAATAGCTTGAAGCAAATCTCCAAACTCACA AAATTGGCCGAGTTCTCCGACTCGTTGACTTTCGTTTCTCGTGCTTTGACCGTTGGAATTTCGCGTGGTTGTCGCTCCGAGGAGGATCAATCGGCGTATA ATTCCGGTATAAGCGACCAGCTGACTGAGAAACTGTTCTCTGAAGCAGGGACTGGATTTATGTCAGTTGTGGTGGGAAGCTTCGCTAGAAATTTGGTTAT GGGGTTCTACTCAGCTGGTGATGAAAACTGTTCTTCATCTACTGATCATGTGCCTACATGGGTTAGTGTGATTTCTAATGAGCAGTGTAAGGAGGTTATA GCTGATTGTATACAGCAGTTTGTGAGCACTGCAGTCACTGTATTTCTTGACAAGACAATCCACATCAACACATACGATCAACTCTTTGCTGGCCTTACAA ATCCGAGCCATGGGAATGATGTCAGAGACGTTCTGGTTGACATCTGCAACGGGTCTGTAGAAACCCTTGTGAAAACTTCGCACCATATCTTGACAACAAC AAGCTCGAATCCCAAATCTGAAGAAGACGATTCATTGGATGGTGGTGGATGGGTTAAGCAGGTATCAGCTACATTGGCAGTGCCGAGTAACAGGAAGTTT GTGGTAGACGTGACTGGTTCGAGACGGTGA
AA sequence Show only first row Show all	>Lus10018663 pacid=23176226 polypeptide=Lus10018663 locus=Lus10018663.g ID=Lus10018663.BGIv1.0 annot-version=v1.0 MDLGLVKAKGLGLYRRRKKWLFLAGVIGLSSYSAYKVYNLPPVAKKRRKLMKLAGALASVAEMVSDSAKTMGVVSKDMKEFVMSDSDEIPNSLKQISKLT KLAEFSDSLTFVSRALTVGISRGCRSEEDQSAYNSGISDQLTEKLFSEAGTGFMSVVVGSFARNLVMGFYSAGDENCSSSTDHVPTWVSVISNEQCKEVI ADCIQQFVSTAVTVFLDKTIHINTYDQLFAGLTNPSHGNDVRDVLVDICNGSVETLVKTSHHILTTTSSNPKSEEDDSLDGGGWVKQVSATLAVPSNRKF VVDVTGSRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10018663 [exp]	0	1
AT3G14830			unknown protein		Lus10041938 [exp]	2.0	0.9475
AT3G14830			unknown protein		Lus10005552 [exp]	2.4	0.9369
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10036788 [exp]	4.0	0.9355
AT1G70160			unknown protein		Lus10010721 [exp]	4.9	0.9344
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10009523 [exp]	5.1	0.9426
AT1G70160			unknown protein		Lus10029209 [exp]	6.5	0.9325
AT1G01820		PEX11C	peroxin 11c (.1)		Lus10041368 [exp]	7.3	0.9038
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10010505 [exp]	7.7	0.9207
AT2G46960		CYP709B1	"cytochrome P450, family 709, ...		Lus10026085 [exp]	10.7	0.9058
AT4G10170			SNARE-like superfamily protein...		Lus10002944 [exp]	10.8	0.9254

Compare expression of checked genes

Lus10018663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.