Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27480 492 / 4e-173 alpha/beta-Hydrolases superfamily protein (.1) AT4G19860 53 / 3e-07 alpha/beta-Hydrolases superfamily protein (.1) AT5G13640 50 / 3e-06 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) AT3G44830 46 / 4e-05 Lecithin:cholesterol acyltransferase family protein (.1) AT3G03310 43 / 0.0003 ATLCAT3 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007728 [exp] 841 / 0 AT1G27480 484 / 3e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10017142 [exp] 64 / 8e-11 AT4G19860 748 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018310 [exp] 62 / 3e-10 AT4G19860 749 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10019519 [exp] 55 / 7e-08 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10017165 [exp] 52 / 1e-06 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10026853 [exp] 50 / 4e-06 AT3G03310 574 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Lus10021564 [exp] 49 / 5e-06 AT5G13640 989 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10003615 [exp] 49 / 9e-06 AT1G04010 1005 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10024927 [exp] 47 / 3e-05 AT1G04010 1021 / 0.0 phospholipid sterol acyl transferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G014400 [exp] 564 / 0 AT1G27480 535 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G121000 [exp] 61 / 7e-10 AT4G19860 781 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G121596 [exp] 58 / 6e-09 AT4G19860 756 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G076300 [exp] 56 / 4e-08 AT3G03310 632 / 0.0 ARABIDOPSIS LECITHIN:CHOLESTEROL ACYLTRANSFERASE 3, lecithin:cholesterol acyltransferase 3 (.1) Potri.014G195500 [exp] 50 / 2e-06 AT1G04010 1040 / 0.0 phospholipid sterol acyl transferase 1 (.1) Potri.001G171000 [exp] 49 / 7e-06 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.003G063100 [exp] 49 / 8e-06 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.004G190100 [exp] 47 / 2e-05 AT3G44830 911 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10018664 pacid=23176294 polypeptide=Lus10018664 locus=Lus10018664.g ID=Lus10018664.BGIv1.0 annot-version=v1.0 ATGAAGACAACATCCACTTCCCTTCAACATATGAGCGGCTTCTTCGTGGCGGCCTTGACGGCGATGATAATACCGTACACTTGTCAATCAACTGCCGCCG GGAATCTCCACCCTCTAGTCCTGGTCCCAGGAACCGGCGGAAACCAGCTGGAAGCCAAACTAACCTCCGACTACAAGCCCTCCAGTCTAGTCTGCTCCCT TTACCCATTGGTTAAACAGAAAGGAGGATGGTTCCGGATGTGGTTCGACCCGACCGTGCTTCTATCCACTTTCACTCGCTGTTTCGCCGAACGAATGATG CTTCACTACGATAAGAACTCCGATGATTTCCATAACGCACCCGGCGTGGAAACCCGAGTCTCCAATTTTGGATCCACCGAATCCCTCCTCTGCCTCGATC CCAGTCTCAAGGGGGTGACTGCATACATGTCGCCGTTGGTGAGTTCGTTGGAAGAGATGGGTTACGCCGACGGCGAAACTCTATTCGGAGCCCCATATGA TTTCCGGTATGGTTTGGCGACCCGAGGCCACCCATGCGCGGTAGGCACCAAATACCTATCGGACTTGAAAGAGCTAATCGAGAAGGCCAGCAATAGTAAC GGAGGGAAGCCTGTAATAATAATGTCGCATAGCCTTGGTGGGCTTTTCGTCCTCCAACTCCTGACCCGAAACTCTGCCTCGTGGGCCGGGCGATTCGTGA AACACTTCGTCGCTCTGTCCGCCCCGTGGGGCGGCACTGTGGACGAAATGCTTACATTTGCATCGGGAAATACGCTCGGAGTTCCCCTGGTGGATCCCTT GCTAGTCAGAGGACAACAGAGGAGCTCTGAGAGCAATATGTGGCTTCTCCCAAATCCGGATCTCTTCGGGGGAACGCCGCTTGTGATTACTCCGAATGGT AATTATTCGGCGTACGAGATTGAAGAATTTTTTGACGCGATTGGATATCCGGAAGGGGTTTATCCGTACAGAACAAGGACTCGGCCATTGGTGGAAGAGT TGTACCGAAACATCCCACCGCATCCGGTAGTCCCCATTACGTGTGTAGTGGGGACAGGAGTGGATACAGCGGAGGCGTTGGTGTATGAAAACGGGTTTGA CGAGCGGCCCAATGTCGTTTATGGAGACGGAGATGGGACTGTGAATATGGTGAGCTTGTTGGGTTTGGAGTCGTTGTGGTCTACGAGTATGAACCGGACG ACGGTTAAGGTTATCAAGTTGAGTGGAGTTTCTCATACGTCCATACTCAATGATGAATTGTCAATTCGTGAGATTGTTGGAGAGATTTCTTCACTTAATT CATTTGCTTCGGCTGACTTGTGA
AA sequence Show only first row Show all	>Lus10018664 pacid=23176294 polypeptide=Lus10018664 locus=Lus10018664.g ID=Lus10018664.BGIv1.0 annot-version=v1.0 MKTTSTSLQHMSGFFVAALTAMIIPYTCQSTAAGNLHPLVLVPGTGGNQLEAKLTSDYKPSSLVCSLYPLVKQKGGWFRMWFDPTVLLSTFTRCFAERMM LHYDKNSDDFHNAPGVETRVSNFGSTESLLCLDPSLKGVTAYMSPLVSSLEEMGYADGETLFGAPYDFRYGLATRGHPCAVGTKYLSDLKELIEKASNSN GGKPVIIMSHSLGGLFVLQLLTRNSASWAGRFVKHFVALSAPWGGTVDEMLTFASGNTLGVPLVDPLLVRGQQRSSESNMWLLPNPDLFGGTPLVITPNG NYSAYEIEEFFDAIGYPEGVYPYRTRTRPLVEELYRNIPPHPVVPITCVVGTGVDTAEALVYENGFDERPNVVYGDGDGTVNMVSLLGLESLWSTSMNRT TVKVIKLSGVSHTSILNDELSIREIVGEISSLNSFASADL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27480			alpha/beta-Hydrolases superfam...		Lus10018664 [exp]	0	1
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10012049 [exp]	6.1	0.8543
AT1G64850			Calcium-binding EF hand family...		Lus10010653 [exp]	9.2	0.8170
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10026382 [exp]	9.9	0.8421
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	11.2	0.8270
AT1G50020			unknown protein		Lus10033758 [exp]	13.7	0.8080
AT3G09085			Protein of unknown function (D...		Lus10021128 [exp]	14.5	0.8061
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10037370 [exp]	15.0	0.8104
AT5G11840			Protein of unknown function (D...		Lus10027492 [exp]	15.7	0.8429
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Lus10028350 [exp]	15.9	0.8065
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Lus10015481 [exp]	16.7	0.8134

Compare expression of checked genes

Lus10018664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.