Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10140 83 / 3e-20 Uncharacterised conserved protein UCP031279 (.1) AT1G58420 76 / 2e-17 Uncharacterised conserved protein UCP031279 (.1) AT5G65925 42 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007729 [exp] 303 / 2e-106 AT1G10140 82 / 1e-19 Uncharacterised conserved protein UCP031279 (.1) Lus10012496 [exp] 160 / 3e-50 AT1G58420 86 / 4e-21 Uncharacterised conserved protein UCP031279 (.1) Lus10012440 [exp] 40 / 0.0002 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G014600 [exp] 107 / 5e-30 AT1G58420 87 / 4e-22 Uncharacterised conserved protein UCP031279 (.1) Potri.014G014500 [exp] 103 / 2e-28 AT1G58420 81 / 9e-20 Uncharacterised conserved protein UCP031279 (.1) Potri.002G117100 [exp] 97 / 6e-26 AT1G58420 84 / 1e-20 Uncharacterised conserved protein UCP031279 (.1) Potri.001G290400 [exp] 49 / 1e-07 ND / Potri.014G006300 [exp] 45 / 5e-06 AT1G58420 56 / 3e-10 Uncharacterised conserved protein UCP031279 (.1) Potri.009G086000 [exp] 44 / 7e-06 ND / Potri.007G006100 [exp] 43 / 2e-05 AT1G58420 68 / 1e-14 Uncharacterised conserved protein UCP031279 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018665 pacid=23176239 polypeptide=Lus10018665 locus=Lus10018665.g ID=Lus10018665.BGIv1.0 annot-version=v1.0 ATGAGTAGATCCAAATCAGGAGGACAGAATCACAACATATTCGTCCGGATTATCACTTCCCCGATTCGGGCCCTAGGAAAAGCCAAGGATCTCTACGTCC GAAGCTTAACGGATTGCGCCGCCGGACCCCGCCAAAAGCGCCGCCGCAATACCTACTACAACAACAATAACGCCCCCCTTCCCCTTCCCCGTAGCCTCAG CGTCGCCTCTTCCATCACAAATATCGGCAGAGGAGGAGGAGAAGACATCCAGGAGCTAATGAGGGCGGCCTCCGTCCGGTACTACGGCCACCAGAACGAG GCGGAGATGTACGTGCAGCAGCTCCGGCAGATCCGCCAGCAGGAGAGGGAGGCTTCCAGATCTGATCATCAGAAGGCGCTCCCCAAGAGTGTCAGCGTCG GGATGGGGTTTATGGGGAGGATTGACGAGGACAACGCCTGTGAAGAATTCGAAGACGACGCCGCCGCCGGGAAAACTGACAAGCTGGGGGACAAGTATCC CCGGAGCAAGAGCTACGCGCCTGTTTCTAATCGGCTCGTCGTTTTCTAA
AA sequence Show only first row Show all	>Lus10018665 pacid=23176239 polypeptide=Lus10018665 locus=Lus10018665.g ID=Lus10018665.BGIv1.0 annot-version=v1.0 MSRSKSGGQNHNIFVRIITSPIRALGKAKDLYVRSLTDCAAGPRQKRRRNTYYNNNNAPLPLPRSLSVASSITNIGRGGGEDIQELMRAASVRYYGHQNE AEMYVQQLRQIRQQEREASRSDHQKALPKSVSVGMGFMGRIDEDNACEEFEDDAAAGKTDKLGDKYPRSKSYAPVSNRLVVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10140			Uncharacterised conserved prot...		Lus10018665 [exp]	0	1
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10017451 [exp]	2.2	0.8133
AT1G11300			protein serine/threonine kinas...		Lus10007600 [exp]	8.8	0.7876
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10029955 [exp]	13.9	0.7903
AT2G36320			A20/AN1-like zinc finger famil...		Lus10035603 [exp]	17.7	0.7642
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Lus10039857 [exp]	19.8	0.7502
AT5G19080			RING/U-box superfamily protein...		Lus10034030 [exp]	20.0	0.7360
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10041838 [exp]	20.1	0.8074
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10001081 [exp]	21.3	0.7884
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10003670 [exp]	22.4	0.6907
AT3G19950			RING/U-box superfamily protein...		Lus10017383 [exp]	22.8	0.7435

Compare expression of checked genes

Lus10018665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.