Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04600 218 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G60900 58 / 1e-09 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) AT3G07810 54 / 3e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G26650 54 / 3e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G47120 51 / 2e-07 C3HZnF RNA recognition motif (RRM)-containing protein (.1) AT5G40490 51 / 2e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G47620 50 / 4e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G51300 50 / 8e-07 splicing factor-related (.1.2.3) AT1G71800 49 / 9e-07 CSTF64 cleavage stimulating factor 64 (.1) AT5G55550 47 / 4e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007730 [exp] 347 / 9e-123 AT5G04600 243 / 6e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10017555 [exp] 52 / 2e-07 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002222 [exp] 49 / 8e-07 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 49 / 9e-07 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10000537 [exp] 49 / 1e-06 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 49 / 2e-06 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032124 [exp] 49 / 2e-06 AT5G40490 307 / 3e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10039054 [exp] 49 / 2e-06 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014562 [exp] 48 / 2e-06 AT5G40490 301 / 9e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G234800 [exp] 258 / 2e-87 AT5G04600 260 / 1e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G050400 [exp] 56 / 6e-09 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.004G040900 [exp] 54 / 2e-08 AT1G60900 541 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.001G126400 [exp] 50 / 4e-07 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.015G005500 [exp] 49 / 1e-06 AT2G46780 145 / 1e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G107200 [exp] 49 / 1e-06 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.001G370300 [exp] 49 / 1e-06 AT3G13224 317 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G022100 [exp] 47 / 3e-06 AT2G46780 161 / 1e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G044900 [exp] 47 / 4e-06 AT3G47120 276 / 8e-91 RNA recognition motif (RRM)-containing protein (.1) Potri.016G010200 [exp] 47 / 5e-06 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10018666 pacid=23176279 polypeptide=Lus10018666 locus=Lus10018666.g ID=Lus10018666.BGIv1.0 annot-version=v1.0 ATGGGCGCTAAGGCGAAGAAAGCTCTCAAGGCTAAACTGAAGAAAGTCACCTCTGCATCGAAAGTCTCCGAGGAGAAACAAATTGCAGCAGCTGCAGATT TCTTGCCACTAGAGGGAGGGCGCGGCCGGAAGATACCGGAGGGGAAGCCGCTGGAAAGCACTGCCAAGCCTACCGTTCTCTATATTGGTCGGATTCCCCA CGGTTTCTACGAGAGTGAAATGGAAGCTTACTTTTCCCAGTTTGGGAAGATTAAGAGATTCAGAATTGCCAGGAACAGGAAGACTGGAAAATCGAAGCAT TATGGATTCATGGAGTTTGAGGATCCTGAGGTAGCTGAAATAGTGGCAGATTGCATGCATAATTATCTTCTGTTTGAGCATCTTCTGCAAGTTCACCTTA TCCCACAGGAGAAAGTTCATCCAAAAATGTGGAGGGGTTACTACAAATACAAGCCCGTAGACCGAGTAAAGATCCAACGTAAGAGGCAGAGCAAGGAGAG AACACTAGAAGATCACAATAAGTTGGTGCAAAAGATTAAGAAGCAAAGCCAGAAACGGCAGAGGAGCATAGCTGCTGCTGGGCTTGACTATGTTTGCCCC GACATTGTAAGCTGCTCTGCTGCTGGCCTTGAAATTTCTGTTCCGGTGGTGGGTGAGGTGTTACATGCTCCAAAGAAGATTAAATTTTCCGAGGACTAG
AA sequence Show only first row Show all	>Lus10018666 pacid=23176279 polypeptide=Lus10018666 locus=Lus10018666.g ID=Lus10018666.BGIv1.0 annot-version=v1.0 MGAKAKKALKAKLKKVTSASKVSEEKQIAAAADFLPLEGGRGRKIPEGKPLESTAKPTVLYIGRIPHGFYESEMEAYFSQFGKIKRFRIARNRKTGKSKH YGFMEFEDPEVAEIVADCMHNYLLFEHLLQVHLIPQEKVHPKMWRGYYKYKPVDRVKIQRKRQSKERTLEDHNKLVQKIKKQSQKRQRSIAAAGLDYVCP DIVSCSAAGLEISVPVVGEVLHAPKKIKFSED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10018666 [exp]	0	1
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10007730 [exp]	1.4	0.8744
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027615 [exp]	3.9	0.8259
AT2G19490			recA DNA recombination family ...		Lus10021585 [exp]	4.5	0.8177
AT3G51270			protein serine/threonine kinas...		Lus10017941 [exp]	6.6	0.8602
AT2G40660			Nucleic acid-binding, OB-fold-...		Lus10034239 [exp]	6.7	0.8188
AT5G62440			Protein of unknown function (D...		Lus10035009 [exp]	6.7	0.8054
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10021905 [exp]	8.5	0.8110
AT1G15420			unknown protein		Lus10007894 [exp]	8.7	0.8483
AT3G54200			Late embryogenesis abundant (L...		Lus10009831 [exp]	10.0	0.8360
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10010993 [exp]	11.0	0.8173

Compare expression of checked genes

Lus10018666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.