Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73280 474 / 6e-152 SCPL3 serine carboxypeptidase-like 3 (.1) AT1G73300 473 / 1e-151 SCPL2 serine carboxypeptidase-like 2 (.1) AT3G12203 471 / 4e-151 SCPL17 serine carboxypeptidase-like 17 (.1) AT3G10450 465 / 8e-149 SCPL7 serine carboxypeptidase-like 7 (.1.2) AT5G36180 464 / 2e-148 SCPL1 serine carboxypeptidase-like 1 (.1) AT1G73270 461 / 4e-147 SCPL6 serine carboxypeptidase-like 6 (.1) AT1G73310 456 / 3e-145 SCPL4 serine carboxypeptidase-like 4 (.1) AT2G22990 455 / 4e-145 SCPL8, SNG1 SERINE CARBOXYPEPTIDASE-LIKE 8, sinapoylglucose 1 (.1.2.3.4.5.6) AT1G73290 451 / 2e-143 SCPL5 serine carboxypeptidase-like 5 (.1) AT2G22920 451 / 2e-143 SCPL12 serine carboxypeptidase-like 12 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007731 [exp] 825 / 0 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10007732 [exp] 543 / 1e-177 AT3G12203 423 / 7e-146 serine carboxypeptidase-like 17 (.1) Lus10010895 [exp] 527 / 2e-171 AT1G73280 444 / 6e-154 serine carboxypeptidase-like 3 (.1) Lus10012718 [exp] 444 / 4e-142 AT1G73300 384 / 2e-131 serine carboxypeptidase-like 2 (.1) Lus10025859 [exp] 354 / 7e-108 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 365 / 4e-107 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 344 / 2e-104 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 342 / 2e-103 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026831 [exp] 296 / 2e-87 AT4G12910 596 / 0.0 serine carboxypeptidase-like 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G124900 [exp] 548 / 3e-179 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G291300 [exp] 452 / 1e-143 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G290900 [exp] 444 / 2e-140 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 441 / 4e-139 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G291700 [exp] 403 / 2e-125 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 399 / 5e-125 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 382 / 3e-118 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.014G177500 [exp] 361 / 3e-110 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.019G054300 [exp] 334 / 5e-101 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.005G091700 [exp] 209 / 6e-58 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10018667 pacid=23176178 polypeptide=Lus10018667 locus=Lus10018667.g ID=Lus10018667.BGIv1.0 annot-version=v1.0 ATGGCGCCGGAAGCAATCTTTTACTTTGTCTTCCTCCTTCTCCTCACTTGGCGGGAGGCAGCCGCAGCAGCTTCCACTCAAGCTACAGTCTCTCATCTTC CGGGATTCAACGGCCCACTTCCCTTTCACCTCGAAACAGGGTATGTCGGAGTGGGAGAATCTGAACAAGTTCAACTATTCTACTACTTCGTTAAGTCGGA GAATAATCCTGAGGAAGACCCGGTGGTGCTCTGGCTCACCGGCGGCCCCGGTTGTTCTGCTTTGTCCGGTCTTGTTTTTGAAATTGGTCCGATAAACTTC GAGGTTAAGGAGTACAACGGGAGCTTGCCTTCACTTGTATTGAACCCAAATTCATGGACGCAGGTGGCTAGCATAATCTTTGTGGATCTGCCGGTTGGAA CAGGGTTTTCATATGCAACAACTGATGAAGCTTCTCAATCAGGTGATTTTCTACAGATTCAACATGCTCATGACTTCTTTAGAAAGTGGTTGATCGACCA TCAGGAGTTCATATCGAACCCGGTTTATGTGGGAGGGGACTCTTACTCTGGCCTAATTGTTCCAGGCGTAGCTGCTACTATTTCGGGCGGGAATGATGAG GGGAAGGCACCATTCATGAATCTCAAGGGGTACGTACTAGGGAATGCTGTAACAGATCAATTGTTCGAGAGTAACTTTGAGATCCCATATGCGTATGGCA TGGCTCTCATTCCTTATGAACTCTTTCAGTCGTTGAAGAGAAGTTGTGGAGGAAACTATAACAGCCCCGACCCTGGTAATGCTGCGTGTGTTAAAAGCCT ACAGGCCTATCACAAGCGCACTGCTGGAATTAACTTTGCACAAATTCTGGAGCCAGCTTGTGCATTCTATTCCCCAAAGCCTATGGAGATGATTTTCTAC AGGAAAAGATACCTGAAGCAGGATTTCCTGAAGCTCCTCAAGGATCAACTTCCTGCAATTGGCTGTCGTGTAAATTCCCCTGCATGTATTTATCTTGATT ATTCTTACAACAGATTCATATATGTGAAGCAAGTTAATGATGGTGAGTTGTGCATGATGATTAATCAGACTTATGGATATCTTCTCTCCAAGTATTGGGC CAATGACCAATCTGTGCGCACAGCACTTCATATCAGAGAGGGAAGCATAGGAACATGGAAGAGATGCAACTACGGATTGCCATATAAGCGTGAGATATTG AGGAGCGTTGATTATCATTTGTATCTCTCAAAGAAAGGCTACCGTTCGTTAATCTACAGCTTCAACAGTGGTGATCATGACATGATGCTGACATACTTGG GAACCCAAGCATGGATACGAAATCTCAACTTCTCCATCGTCGATGATTGGAGATCATGGCATGTCGATAACCAAGTTTCTGGGTATACGAGGACGTACTC TAATGAGATGACATTTGCAACAGTCAAGGGAGGAGGGCATACAGCTCCAGAGTACAGACCGTCTGAATGTTTTGCAATGTTTCGAAGGAGATCATGCCGC CTAGTAGAGCTAGACGAGGATGCATGGGGAGCCGTGTCGAAGACGAGGCTGAGTGGTCGGTTCACAGCTAATACCGTGGTGGCAGCACCATGCTTGCAGT CTGCAAGAGTCTACGGTCGTGGTGATCAACCAGAATTAGACAGTAGCAGCAACAACAGTTTCAGCAACTTAATCGTTTTAACACCTGACCTACCCAGAAT GAAGAGACAGCCCGAAATAGAGATGTTTGAAGTCCTCCCTCGCATCAACATCAAGCTACCAAACATACACAAACAGAAGTATATTGGGGTGGGAGAAGGA GAAGAAGTTGAGCTGTTTTACTATTTTGCGAAATCAGAGACCAATCCTCAAGACGATCCACTCCTCCTCTGGCTCACTGGCGGCCCTGGCTGCTCTGCCT TAACTGGTCTTTCCTTTGAAATTGGTCCGATTCGATTCGAGGTATCGGAGTACAACGGCAGCTTGCCAACCTTGATTCTGAACCCCAACTCCTGGACTAA GGTTTCGAGCGTAATATTCGTGGACTTGCCCGTTGGAGCAGGATTCTCTTACACAACAAACCCATCTACTGATCAGTCAAGTGACAGTCTCCAAGTTTCC CAAGCTGAGGATTTCCTTAGAAAATGGCTGAAGATTCATCCGGAATTCCTGTCGAATCCCCTTTACATTTCTGGAGATTCCTACTCAGGCATCACAATTC CAGCCTTGTTGCAACAGCTCTCAATCGGAAACGGAAAAGGCATTCAACCCATGTTAAATCTCAAGGGATACACAATTGGGAACCCTGTAAGTGGAGGCGG ATTTGATAACAATGCCCAAATCCCATTTGCACATGGGATGGCACTCATTTCGGATGAACTTTACCAGTCGCTGGAGGAGAGCTGTGGGGGAGAGTACGAG AGAGTAAGCCCTGACAACTTGGAATGCCGGAAAAACTTAAATGCTTTCCGAGAGTGTCTGTCAGGAATTCAACCTGGGAGCATATTGGATCCAATATGTC TCTATGGTTCCCTAAACCCAATGGAAATGAGTTTCAGAAGAAGAATCCTTCAGGATGAGTCCCAACTGTCCCTGGATCCACCTGAGTTCGGCTGTAGCCC CCAGCTATATTCTTACCTTCTTTGCAAATACTGGGTCGATGATGAACAAGTCCGCAAAGCACTTCACATAAGAGAGGGGACCATCGGAGATTGGGTGAGA TGTAACTATGGGATGAATTACGAAAGTGATATTCATGGTAGTTTCGATTATCATGTCTATCTTTCAGCTAAGGGCTACCGTTCATTGATATACAGTGGAG ATCATGATCTTGTGGTGCCATTTCTGGGAACCCAAGCATGGATTCGGGCTCTCAACTATTCTATTGTGGAAGATTGGCGATCCTGGCATGTTGAAGGCCA AGTTGCAGGGTATACAAGGACTTACTCTAATGAAATGACATATGCGACGATCAAGGGCGGAATGCATACGGCTCCAGAGAATAAACCAGCAGAATGTTAT GCTATGTTCAGACGGTGGATAAATCACCAGCCTTTGTATATTGGTGTTGGAGAAGCAGAGGAAGTTGAGCTGTTCTACTACTCCGTAAAGTCGGAGACGA ATCCTGAAGAAGATCCTCTCCTTCTCTGGATATCGGGCGGCCCTGGCTGCTCTGCCTTATCCGGCCTCACCCTTGAAAATGTGGCTAAGGGGACATACGG AATTTCTGATGAATCCACTTTACATTGTGGGAGATTCCTACTCAGGCATCACCATTCCAGCTATAGTCCAAAGCCTCTCTATTGGTATGAATGTGACATT TTATTTGAGTATGCACTTAGCCGTTGTAAAGACTTAACCTTTGATACACTTTCTGCAGGCAACGAAAAGGGCATTGAGCCGATGTTAAACCTCAAGGGAT ACATACTGGGAAACCCTGTAACAGATTTTAGTCTTCATATGAACGCTCAAATCCCAGTTGCACATGGGATGGCACTCATTTCGGACGAGCTCTACGAGGC ATTGGAAAAAAGCTGTAAGGGAGAGTACTCCAAAGTGGATCCTACCAACTTGGAATGTAAGAATAACTTAAAGTCTTTCCGCCAGAGTCGTCATAAGCTG CTTTGCAAATACTGGGCCAACGACGATACAGTCCGCAAAGCACTTCACATAAGACAGGGGACAATAGGGGAGTGGCTCAGATGCAATTTTTGGTTGGATA ACGAACACGACATTACTAGCAGTTTCGAATATCATCTCCACCTTTCAACCAATGGTTATCGTTCATTGATCTACAATGGAGATCATGATCTTGTGGTGCC GTTCCTTGGAATGCAAGCTTGGATTCGAGCTCTCAACTATTCAATTGTTGAAGACTGGCGTTCTTGGAGTGTTCAAGGCCAAGTTGCAGGGTATTTTTTA GTGTTTGCAGCATCAAACATAGAACCACCAGAGTTCCATGATGAATTTTGTTCTGTCTATGTGCTTTTCAGGTACACGAGAACCTATTCGAATGGAATGA CCTATGCGACGTCGAAGGGTGGACAACATGTTGCTTTGGAAAACAAGGCTGCTGAATGTTTTGCTATGTTCGAGCGATGGATACACCATGAGCCTTTGAA ATGTGTTGAGATATATAGGGACAATGTCGCGGAAAGAAGAATGGGAATCGTAATTCATCGAGTGGCTCTGGCATTTTTATTACAGTTACAGGTGTTATTC GCAGACTCTGGAGGAATCGTAAAGTATCTTCCTGGATATGAGGGGGCTCTGCCGTTTGACATGGAAACAGGGTATATTGGGGTAGGGGAAGCAGAGGAAG TGCAACTGTTTTACTATTTTGTAAAGTCGGAGAGGAATCCTGAAGAAGACCCTCTTCTCCTCTGGCTCACTGGTGGCCCTGGATGTTCTTCCTTCACTGC CCTTGCCTTTGAGATTGGTCCTTTTGGTTTCAAAGTAGTTGAATACAATGGGAGCTTACCCACCTTGGTCTTGAATCCCAACTCCTGGTCCAAGGTTTCC AGTATAATATTTCTAGACCTCCCGGTTGGAGCTGGATTCTCATACGCCGCAGACGAACTTTCTTACAAGTCGAGTGACAGCATTCAAGCTGTCCAAGCTG CCCAATTCATCAGAAAATGGCTGAAGAAAAATGCAGAGTTCCGGTCAAATCCACTTTACATTGGTGGGGATTCCTACGCAGGCATCCCTCTGCCTATCGC AGTCCAACTCATTTCCCACGGGAACGAAATGGGTATGAAACCGATGTTGAATCTCAAGGGATATGTACTTGGGAATCCGAAGACCGACGATCGATTTGAT CAGAATTCCAGAATCCCAACTGCTCACGGGCTGGCTCTCATTTCCGATGAGCTCTACCAGTCATTGGAGACAAGTTGCGGGGGAGAGTATAAGAATGTCA AGCCTAGTAATTATGAATGTGTCAATAGTTTAGCTTCTTATGAAAAGACTTACCCTCATCTACTTTCCTATTACTGGGCTGACGATCAAGCTGTCAGGAA AGCACTTCATGTCAGAAAGGACACAGTGAAGAGATGGATACGGTGTAATAAAAGATCTGATTACAGATATGACGTTAGTAGCAGTTTCGACAATCATGTT TATCTTTCGAACAAAGGCTTTCGTTCATTAATCTACAGCGGAGATCATGATATGGTGGTACCATCAATGGGGACACAAGCTTGGATTCGAGCTCTCAACT ATTCAATGGTGGAAGAGTGGCGATCTTGGCACGTGAAGGGCCAAGTTGCAGGGTACACAAGAACATACTCCAATGGAATGACATTCGCAACAGTAAAGGG AGCAGGACATATAGCTCCGGAGTACAAGGCAGTGGAATGCACAGCTATGTTCAAAAGATGGATAAATGAAGAGCCTCTTTGA
AA sequence Show only first row Show all	>Lus10018667 pacid=23176178 polypeptide=Lus10018667 locus=Lus10018667.g ID=Lus10018667.BGIv1.0 annot-version=v1.0 MAPEAIFYFVFLLLLTWREAAAAASTQATVSHLPGFNGPLPFHLETGYVGVGESEQVQLFYYFVKSENNPEEDPVVLWLTGGPGCSALSGLVFEIGPINF EVKEYNGSLPSLVLNPNSWTQVASIIFVDLPVGTGFSYATTDEASQSGDFLQIQHAHDFFRKWLIDHQEFISNPVYVGGDSYSGLIVPGVAATISGGNDE GKAPFMNLKGYVLGNAVTDQLFESNFEIPYAYGMALIPYELFQSLKRSCGGNYNSPDPGNAACVKSLQAYHKRTAGINFAQILEPACAFYSPKPMEMIFY RKRYLKQDFLKLLKDQLPAIGCRVNSPACIYLDYSYNRFIYVKQVNDGELCMMINQTYGYLLSKYWANDQSVRTALHIREGSIGTWKRCNYGLPYKREIL RSVDYHLYLSKKGYRSLIYSFNSGDHDMMLTYLGTQAWIRNLNFSIVDDWRSWHVDNQVSGYTRTYSNEMTFATVKGGGHTAPEYRPSECFAMFRRRSCR LVELDEDAWGAVSKTRLSGRFTANTVVAAPCLQSARVYGRGDQPELDSSSNNSFSNLIVLTPDLPRMKRQPEIEMFEVLPRINIKLPNIHKQKYIGVGEG EEVELFYYFAKSETNPQDDPLLLWLTGGPGCSALTGLSFEIGPIRFEVSEYNGSLPTLILNPNSWTKVSSVIFVDLPVGAGFSYTTNPSTDQSSDSLQVS QAEDFLRKWLKIHPEFLSNPLYISGDSYSGITIPALLQQLSIGNGKGIQPMLNLKGYTIGNPVSGGGFDNNAQIPFAHGMALISDELYQSLEESCGGEYE RVSPDNLECRKNLNAFRECLSGIQPGSILDPICLYGSLNPMEMSFRRRILQDESQLSLDPPEFGCSPQLYSYLLCKYWVDDEQVRKALHIREGTIGDWVR CNYGMNYESDIHGSFDYHVYLSAKGYRSLIYSGDHDLVVPFLGTQAWIRALNYSIVEDWRSWHVEGQVAGYTRTYSNEMTYATIKGGMHTAPENKPAECY AMFRRWINHQPLYIGVGEAEEVELFYYSVKSETNPEEDPLLLWISGGPGCSALSGLTLENVAKGTYGISDESTLHCGRFLLRHHHSSYSPKPLYWYECDI LFEYALSRCKDLTFDTLSAGNEKGIEPMLNLKGYILGNPVTDFSLHMNAQIPVAHGMALISDELYEALEKSCKGEYSKVDPTNLECKNNLKSFRQSRHKL LCKYWANDDTVRKALHIRQGTIGEWLRCNFWLDNEHDITSSFEYHLHLSTNGYRSLIYNGDHDLVVPFLGMQAWIRALNYSIVEDWRSWSVQGQVAGYFL VFAASNIEPPEFHDEFCSVYVLFRYTRTYSNGMTYATSKGGQHVALENKAAECFAMFERWIHHEPLKCVEIYRDNVAERRMGIVIHRVALAFLLQLQVLF ADSGGIVKYLPGYEGALPFDMETGYIGVGEAEEVQLFYYFVKSERNPEEDPLLLWLTGGPGCSSFTALAFEIGPFGFKVVEYNGSLPTLVLNPNSWSKVS SIIFLDLPVGAGFSYAADELSYKSSDSIQAVQAAQFIRKWLKKNAEFRSNPLYIGGDSYAGIPLPIAVQLISHGNEMGMKPMLNLKGYVLGNPKTDDRFD QNSRIPTAHGLALISDELYQSLETSCGGEYKNVKPSNYECVNSLASYEKTYPHLLSYYWADDQAVRKALHVRKDTVKRWIRCNKRSDYRYDVSSSFDNHV YLSNKGFRSLIYSGDHDMVVPSMGTQAWIRALNYSMVEEWRSWHVKGQVAGYTRTYSNGMTFATVKGAGHIAPEYKAVECTAMFKRWINEEPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10018667 [exp]	0	1
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10029495 [exp]	2.2	0.9455
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10002917 [exp]	2.6	0.9321
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Lus10007974 [exp]	3.6	0.9258
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10017199 [exp]	4.8	0.9131
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	4.9	0.9316
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Lus10031438 [exp]	6.3	0.9280
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10039599 [exp]	7.2	0.9416
AT5G49710			unknown protein		Lus10015965 [exp]	8.7	0.9432
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	8.7	0.9401
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	9.2	0.9429

Compare expression of checked genes

Lus10018667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.