Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10130 1471 / 0 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) AT1G07670 725 / 0 ATECA4 endomembrane-type CA-ATPase 4 (.1) AT1G07810 720 / 0 ATECA1, ACA3, ECA1 ER-type Ca2+-ATPase 1, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ER-type Ca2+-ATPase 1 (.1) AT4G00900 711 / 0 ATECA2, ECA2 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) AT3G57330 303 / 8e-88 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT2G41560 294 / 1e-84 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G22910 276 / 3e-78 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT4G37640 272 / 7e-77 ACA2 calcium ATPase 2 (.1) AT5G57110 270 / 7e-76 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT1G27770 269 / 9e-76 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007734 [exp] 1743 / 0 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10042843 [exp] 720 / 0 AT1G07670 1799 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10028139 [exp] 719 / 0 AT1G07670 1798 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10023328 [exp] 692 / 0 AT1G07670 1549 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10038484 [exp] 402 / 3e-126 AT1G07670 816 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10042040 [exp] 273 / 4e-77 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10031053 [exp] 273 / 5e-77 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10035439 [exp] 270 / 5e-76 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10018687 [exp] 266 / 7e-75 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G014700 [exp] 1565 / 0 AT1G10130 1659 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.002G117400 [exp] 1549 / 0 AT1G10130 1648 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.009G025700 [exp] 711 / 0 AT1G07670 1743 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.001G233400 [exp] 708 / 0 AT1G07670 1800 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.014G101900 [exp] 693 / 0 AT4G00900 1698 / 0.0 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) Potri.016G043100 [exp] 305 / 2e-88 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.013G040201 [exp] 300 / 1e-86 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.005G052700 [exp] 290 / 2e-83 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G020600 [exp] 287 / 5e-82 AT2G41560 1455 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.003G204000 [exp] 280 / 2e-79 AT2G41560 1398 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00689 [flax] [poplar] Cation_ATPase_C Cation transporting ATPase, C-terminus CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10018668 pacid=23176213 polypeptide=Lus10018668 locus=Lus10018668.g ID=Lus10018668.BGIv1.0 annot-version=v1.0 ATGGTTATTCTCTTGATTTTGGCTGCCAATGCTGCAGTTGGCGTTATTACAGAAACAAATGCTGAAAAAGCTCTTGAGGAGTTACGTGCCTATCAAGCTG AAGTTGCGACTGTGCTACGAAATGGGTGTTTTTCAATACTTCCAGCAACAGATCTTGTTCCCGGTGACATAGTGGAAGTGACAGTGGGATGCAAGGTTCC AGCTGACATGAGAATGATTGAGATGTTAAGTGATCAGTTACGTGTGGACCAGGCAATCCTTACTGGTGAAAGCAGTTCGGTTGACAAGGAGCTCGAGTCA ACTGTGACAACCAATGCTGTATATCAGGACAAAACAAACATCCTTTTCTCGGGCACTGTTGTGGTCGCGGGGAGAGCAAGAGCTGTGGTTGTTGGAGTTG GTGCTAATACTGCTATGGGGAGCATACGCGATTCAATGTTACATACAGACGATGAAGCTACACCACTCAAGAAGAAGTTGGATGAGTTCGGCAGTTTTCT GGCTAAGGTTATTGCAGGGATTTGTGTCCTAGTATGGATTGTTAACATAGGCCACTTCCGTGATGCTGCTCATGGTGGTTTCTTCAGGGGGGCAATCCAT TACTTCAAGATTGCAGTTGCTCTTGCAGTTGCTGCAATTCCCGAAGGACTTCCTGCTGTTGTTACCACGTGTTTGGCTTTGGGAACAAAGAGGATGGCTC GGTTGAACGCGATTGTGCGGTCTTTGCCATCAGTTGAGACTTTGGGCTGTACTACTGTCATTTGCAGTGACAAGACAGGGACTTTGACCACAAATATGAT GTCTGTCTCTAAGATATGTGTTTTGGACTCTTTTCATCATGGGCCTTTGATCACTGAGTACAGTATAAGTGGAACCACTTATGCTCCAGATGGAATTATA TACGACAACAATGGATTGCAGCTTGAACTGCCAGCTAAGTTGCCCAGTCTTCTTCACCTGGCTATGTGTTCAGCTCTTTGTAATGAATCCGTCCTGCAAT ACAACCCAGATAAAACCTGCTATGAAAAAATTGGGGAGTCAACTGAAGTGGCACTTCGGGTTCTAGCAGAGAAGGTTGGTCTTCCTGGTTTCGATTCTAT TTCGTCTGCACTCCACATGCTAAGCAAGCATGAGCGCGCCTCCTACTGTAATCATTATTGGGAAAACCAATTCAGAAAGATTTCTGCATTGGATTTCTCT CGTGATCGGAAGATGATGAGCGTCTTATGCAGTCAAAAGCACACACAAGTTATGTTTTCGAAAGGTGCCCCAGAGAGTATTTTGTCAAGATGCTCTCATA TCCTCTGTAATGATAATGGGTCCACCATTCCGCTATCTGCTAACATTCGAGATGAAGTAGAATCAAGGTTTCACAGTTTTGCAGGGAAAGAAACATTGAG ATGCTTGGCTCTGGCCATGAAACAGATGCCTGTAGAGCAGCAGAGCCTCTCCCTAGATGATGAGAAGGGCCTGACTTTCATTGGGTTGGTTGGAATGCTT GATCCACCAAGAGAAGAAGTAAGAAATGCTATGCTTTCATGCATGACTGCTGGTATACGCGTCATTGTTGTTACTGGTGACAATAAGTCAACAGCAGAGT CACTTTGCCGGAAGATAGGTGCTTTCGATCACTTGGAAGATTTTTCTGGGCATTCTTATACTGCCTCGGAGTTTGAAGAACTTCCACCTTTACAGCAAAC ACTTGCTCTGCAACGCATGGCACTCTTTACTAGGGTGGAACCAACTCACAAAAAAATGCTGGTGGAGGCCTTGCAACATCAAAATGAAGTGGTGGCAATG ACTGGTGATGGTGTAAATGATGCACCTGCCCTAAAGAAGGCAAACATAGGAATCGCCATGGGGTCTGGAACAGCAGTTGCAAAGAGTGCCTCTGATATGG TGTTGGCCGATGATAATTTTGCTTCAATTGTTGCGGCTGTTGCAGAAGGGAGGGCAATTTATAATAACACAAAGCAGTTCATCAGATACATGATCTCTTC AAATATTGGTGAAGTTGTTTGTATCTTCGTGGCAGCTGTACTTGGAATACCAGATACCTTGGCTCCTGTCCAACTGCTATGGGTAAATCTGGTGACTGAT GGCTTGCCAGCAACCGCAATTGGTTTTAACAAGCAAGATAGTGATGTTATGAAGGTCAAACCTCGGAAGGTTAATGAAGCAGTAGTTAGTGGATGGTTGT TTTTCCGTTATTTGGTTATTGGAGCCTACGTCGGCCTGGCCACAGTTGCAGGATTTGTGTGGTGGTTTTTGTACTCAGATAATGGTCCGAAATTACCATA TCGAGAACTGATGAGTTTCGACACGTGTTCAACAAGGGATACTACTTACCCATGTAGCATATTTGAGGACCGGCATCCATCAACTGTATCAATGACAGTG CTTGTTGTTGTTGAGATGTTTAATGCTCTAAACAATCTTAGCGAAAATCAGTCTCTATTTGTTATCCCTCCCTGGAGTAATATGTGGCTGGTTGGATCAA TTGTCCTGACTATGATCCTTCACGTACTAATCTTATATATCCCTCCTCTCTCTGTTCTTTTCTCTGTAAGAGCTCTCTATCCTATCCTTGATTTATTGCA TTCGTTTTCAACACTTTTATTCATTATATCCGCTGCTGTGAAGAATTTATCATCAATCTGCAATTTGACTTCGTCGCAGGTGACACCTCTGTCTTGGTCT GATTGGAAAATCGTATTGTATCTTTCATTCCCTGTCATTATTATTGACGAACTATTGAAGTTCTTCTCGAGAAAACCGAACGGTAATTTTCCTGTTGGAG ATATGCAAGGATTTAAGCAAAAATGTCAAAACATAAACCTGGTTCATCTGGGATGCAGGTTTGAGGTTGGGTCTTCGGTTCCGAAGGAATGA
AA sequence Show only first row Show all	>Lus10018668 pacid=23176213 polypeptide=Lus10018668 locus=Lus10018668.g ID=Lus10018668.BGIv1.0 annot-version=v1.0 MVILLILAANAAVGVITETNAEKALEELRAYQAEVATVLRNGCFSILPATDLVPGDIVEVTVGCKVPADMRMIEMLSDQLRVDQAILTGESSSVDKELES TVTTNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLHTDDEATPLKKKLDEFGSFLAKVIAGICVLVWIVNIGHFRDAAHGGFFRGAIH YFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVLDSFHHGPLITEYSISGTTYAPDGII YDNNGLQLELPAKLPSLLHLAMCSALCNESVLQYNPDKTCYEKIGESTEVALRVLAEKVGLPGFDSISSALHMLSKHERASYCNHYWENQFRKISALDFS RDRKMMSVLCSQKHTQVMFSKGAPESILSRCSHILCNDNGSTIPLSANIRDEVESRFHSFAGKETLRCLALAMKQMPVEQQSLSLDDEKGLTFIGLVGML DPPREEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLEDFSGHSYTASEFEELPPLQQTLALQRMALFTRVEPTHKKMLVEALQHQNEVVAM TGDGVNDAPALKKANIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTD GLPATAIGFNKQDSDVMKVKPRKVNEAVVSGWLFFRYLVIGAYVGLATVAGFVWWFLYSDNGPKLPYRELMSFDTCSTRDTTYPCSIFEDRHPSTVSMTV LVVVEMFNALNNLSENQSLFVIPPWSNMWLVGSIVLTMILHVLILYIPPLSVLFSVRALYPILDLLHSFSTLLFIISAAVKNLSSICNLTSSQVTPLSWS DWKIVLYLSFPVIIIDELLKFFSRKPNGNFPVGDMQGFKQKCQNINLVHLGCRFEVGSSVPKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10018668 [exp]	0	1
AT5G22780			Adaptor protein complex AP-2, ...		Lus10019520 [exp]	1.4	0.9297
AT2G16405			Transducin/WD40 repeat-like su...		Lus10017483 [exp]	4.5	0.8896
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	4.7	0.9194
AT5G58510			unknown protein		Lus10031287 [exp]	4.9	0.8893
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10011919 [exp]	6.6	0.8606
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10016697 [exp]	6.9	0.8592
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Lus10023563 [exp]	7.0	0.8879
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000715 [exp]	7.0	0.8307
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10012966 [exp]	8.0	0.8868
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10022850 [exp]	8.5	0.8902

Compare expression of checked genes

Lus10018668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.