Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27461 276 / 7e-91 unknown protein AT5G50360 47 / 9e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007752 [exp] 655 / 0 AT1G27461 300 / 6e-100 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G117700 [exp] 361 / 4e-124 AT1G27461 273 / 2e-89 unknown protein Potri.014G015300 [exp] 341 / 2e-116 AT1G27461 258 / 9e-84 unknown protein Potri.001G334500 [exp] 47 / 2e-05 AT3G27250 153 / 6e-44 unknown protein Potri.012G094400 [exp] 42 / 0.0003 AT5G50360 233 / 3e-75 unknown protein Potri.015G091900 [exp] 42 / 0.0005 AT5G50360 221 / 8e-71 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018671 pacid=23176204 polypeptide=Lus10018671 locus=Lus10018671.g ID=Lus10018671.BGIv1.0 annot-version=v1.0 ATGATCAAGACATTGACTCCTTACTCAAACACAGCCAAAACGGCTGAGATCATGTCCAGGTACAGGCCAATTGCTCCAAAGCCGGACTGCCCTTCCAATT CCGAGGATGAGAGTTCCTCCATGTCTCAGAAAATCATCCAATCTCCTTACCTGAGGAATCTGTGGCCACAATTGCAAGCCAGGCCAACAAGAACCAGGAA GAGGGGCAGAGGAGCTTTATCTCCACCTGTTGTGAAAAGGCCCAGAACCCATCAAATGTTTTCCATTTCCCCGCCGGCTGAGCACCTCGGCATGCAGGGT TTTTACCCTACTGGGTTTTCTCAGCTTCCTACTGTCCAAAATCCGGGTGCAATTCAGAGCAATTCAGTGATTGCCTCGCCTTCTAGCCTGGTCACTCTTC CTCTTCTTTCTCCATCAGCCGCATTTCAGGGAATGCAGCCTCATGAGCTGATGAGATGCATGGCACCAAGTCAAGAGAGGGACATAGATTTGAACACGGT TGTCGAAATCCCAGAGGAGAAGGATCTGTTGCGGCAACTTCAGGAAAGGCATACTACTACCAACGTTATAGCACCGCAGCCTGTCCGTCCTGTTGTCTCA ACCATAAGAGTTGGCTGCATCAATGAAACCCCAGGGGTCCCACCGGTTCAGTATCAGAAAATGCCAGAGCAGGTTGAGGAAGAGGTGGAGTCCGATGTCC TGCCAGCAGTAATATCAGATTCGAACAACAAAGTGAGGCTGGCGAATTCGGCATACAAGGAAATGGTTGGTCAACCAGAGTGTTCGTGGCTCAATTTAAT GGTGACGGGGAATGACCGACTGGGATTCGGCAGCTCATGCTGTCAAAGGATATCTGGAGAAGTGGCCCTGCACCTTTCCGATTCAAAGGTGCCCGTTTCA TCAAACGGGTTTTCATGTTGGGTGAGGATTGAATGGGGAAGCCAAGGGAAGAAGAGTTCTGTCAATGCCTTTTGTGATGTCATCAGATTGTCCTGCAAAT CCAAGGATTATCTCTTCACATGGAGGTTTCACACACCTGCCAGACAAGGTTCCCGAATCAGCAGCAATGTTTAG
AA sequence Show only first row Show all	>Lus10018671 pacid=23176204 polypeptide=Lus10018671 locus=Lus10018671.g ID=Lus10018671.BGIv1.0 annot-version=v1.0 MIKTLTPYSNTAKTAEIMSRYRPIAPKPDCPSNSEDESSSMSQKIIQSPYLRNLWPQLQARPTRTRKRGRGALSPPVVKRPRTHQMFSISPPAEHLGMQG FYPTGFSQLPTVQNPGAIQSNSVIASPSSLVTLPLLSPSAAFQGMQPHELMRCMAPSQERDIDLNTVVEIPEEKDLLRQLQERHTTTNVIAPQPVRPVVS TIRVGCINETPGVPPVQYQKMPEQVEEEVESDVLPAVISDSNNKVRLANSAYKEMVGQPECSWLNLMVTGNDRLGFGSSCCQRISGEVALHLSDSKVPVS SNGFSCWVRIEWGSQGKKSSVNAFCDVIRLSCKSKDYLFTWRFHTPARQGSRISSNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27461			unknown protein		Lus10018671 [exp]	0	1
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10011105 [exp]	2.0	0.8089
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10009163 [exp]	4.5	0.8599
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10001666 [exp]	9.0	0.7119
AT2G46910			Plastid-lipid associated prote...		Lus10010277 [exp]	12.5	0.8021
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	14.7	0.8059
AT3G26880			Plant self-incompatibility pro...		Lus10025937 [exp]	21.6	0.7932
AT3G22250			UDP-Glycosyltransferase superf...		Lus10031068 [exp]	22.8	0.7293
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10025719 [exp]	24.6	0.7784
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Lus10011440 [exp]	24.7	0.7835
AT1G64355			unknown protein		Lus10023098 [exp]	26.9	0.7634

Compare expression of checked genes

Lus10018671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.