Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31540 221 / 3e-62 ATEXO70G1 exocyst subunit exo70 family protein G1 (.1) AT1G51640 168 / 7e-44 ATEXO70G2 exocyst subunit exo70 family protein G2 (.1) AT5G52340 152 / 1e-38 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G03540 140 / 4e-35 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT1G54090 132 / 5e-32 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT3G14090 127 / 3e-30 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT5G52350 126 / 4e-30 ATEXO70A3 exocyst subunit exo70 family protein A3 (.1) AT1G72470 124 / 2e-29 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT5G50380 110 / 4e-25 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT5G58430 108 / 2e-24 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007751 [exp] 1267 / 0 AT4G31540 239 / 8e-69 exocyst subunit exo70 family protein G1 (.1) Lus10014917 [exp] 964 / 0 AT4G31540 242 / 4e-70 exocyst subunit exo70 family protein G1 (.1) Lus10027347 [exp] 964 / 0 AT4G31540 239 / 3e-69 exocyst subunit exo70 family protein G1 (.1) Lus10026230 [exp] 229 / 3e-65 AT4G31540 1045 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10042439 [exp] 224 / 1e-63 AT4G31540 1034 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10037329 [exp] 147 / 1e-36 AT4G31540 627 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10021283 [exp] 143 / 2e-35 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10043432 [exp] 132 / 6e-32 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10031956 [exp] 119 / 1e-27 AT3G29400 581 / 0.0 exocyst subunit exo70 family protein E1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G015500 [exp] 907 / 0 AT4G31540 250 / 4e-73 exocyst subunit exo70 family protein G1 (.1) Potri.006G272900 [exp] 218 / 3e-61 AT4G31540 1010 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.018G008400 [exp] 207 / 3e-57 AT4G31540 971 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.010G250500 [exp] 187 / 1e-50 AT4G31540 731 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.008G008700 [exp] 167 / 1e-43 AT4G31540 716 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.016G071000 [exp] 154 / 4e-39 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.006G203900 [exp] 147 / 4e-37 AT5G52340 988 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.008G017800 [exp] 140 / 2e-34 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.010G241800 [exp] 136 / 3e-33 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.001G166400 [exp] 129 / 4e-31 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10018672 pacid=23176207 polypeptide=Lus10018672 locus=Lus10018672.g ID=Lus10018672.BGIv1.0 annot-version=v1.0 ATGACGATCGACGTTGACCAATCATGCGTCGCTAATCTTGCCTCAACATGTTCCGATTTGCGGACGCTCCTCCAGACATCGTCCAAGATGGAAGATATCC TCCGTCAGATGGACGACCGGTTCGAAGTTATGGACGATAACCTGGCCACCACCTCCAGGAGAATCGCTCCGCTTCAATCTCTAGCCATGGCCTCCAAAGC TCTCGACACTAGAATCAATCGAGCAGTCTCACCTGCTTTTGCTCTTCTCGACGGGTTCAAGCGCTCCGAGTCGCTCCAGAAGAAGCTCATTCATCTATCT GGGAAACTGGAGGCCGAGAGGAAATCCAAGAAGCGGATGAGGCTCTTGCTCAAGTACGTAGATCACGTCCATCAGCTGAGTTCCGCGATTGATTCCATTT TCCAGGACGGGGAGCCCGCGATCCAGAAGCTGCAAGAAGTTGTAGAGTTTCTGAGCAGGACCAAGGCCACGGATCATTTTCGGACGCATAGGCTGAGGGA GACTTTAGTCACGCTCAAGGCGCTCTATGAGAATGAAGTGGACGCAATGAAGTTCGAAGGGTTTCTGGATCAAACGCTGCTGAATTTGCAGGATGAATAC AAGCAGATTCTTCAGCAGCTCAAGCATCAGAATTTGGGGGATTCTCGAAGGGAAGATGATAATGATGATGATGAAGACGGTGATGTTGCCTTGTCTTCTG ATCTTGGTACTGATCTTGAAATTGAAATCCTGAAGCGGATTTCCGAAATCCTCTGTTCTAACGATTGTTTGGATATCTGCATCGACATATTCGTCAAGGT AAGGTACAGAAGGGCGGCTAAAGCGTTAATGAAGTTGAATCCAGACTACCTGAGAACGTACACGCCGGAAGAGATCGACGAAATCGAGTGGGAGGCACTG GAAACGGCGATAAGCCATTGGATACAGCACTTCGAGCTAGCTTTGAAAACAGTTTTCATATCGGAAAAGAAGCTCAGCCACCGAGTTCTGGAAGGGATAT TGGACGGAGCCGTGTGGCTGGAATGCTTCATCAAGATCGCCGACAAAATCATGGCGGTTTTCTTCCGATTCGGAGAAGGTGTAGCCAGGAGCAGCAAAGA GCCGCAGAAGCTGTTCAAGCTTCTAGACATGTTCGATTCATTGGAGAAAATTAAACCAGAGTTCACAGCCATTTTCGAAGGGGAAGCTGGGTTCGACATC TGTTCCAGATACAGAGAACTGGAAAAGCTACTCGTCCATTCATCAAGCAAAGTTTTCTGGGAATTCGGTCTTCAAATTGAAGGAAACTCCGACGGGTTTC CTCCCCCGCAAGATGGGTCGGTACCAAAACTTGTTAGGTATGCAATTAACTATCTCAAATACCTAGCCACCGAAGGTTACAGCGTTCCCATGGCGAAAGT TCTCCGAACAGAACAGATCTGGAAAGCAGGGATACTATCAAAACCAGACTCCGACGAGAATCTGCTCAAGGAAGCTGTTACAAACATTTTGGAAGCTCTG CAGCGGAACATCGAATCGAAAAGATCTAGATACAAAGCTAAAGTACTCCCTCACATCTTCGCAATGAACACTTACTGGTACATCTACATGAGGAAGTTGT TGGGGGAGCAATACATGAAGCAGAAATACAAATTGGTGGCGGAAGAATCGGCTTATGTATACCAGAAGCAAGCTTGGGGCCCGTTGGTAAGGTTGTTGGA GGCGGAGGATATGAAGAGGAGCCACGGAAATCTGCAGCAAGATTCGGGGGCCGCCGTGAGGGCAAAGGTGGAAGTGTTCCTCAAGGCGCTGGAGGCGATA TCGGAGCGACACAGGTCATCGTACACGATCCCTGACGGAGTTCTGAGGGAGCAAATCCGCGGAGCGACGGTGAAGGTGGTCGTTCCAGCGTACACGGATT TCCTCAACAACTATCCACGGGCTACCCAGGTGAAGAGCTTCCCTAGCCCGGATTCGATTCAGGCGATGGTTGGTCGGGTTTTTAACTACGGAGAGCATTA CCCGGCGGCCGGAGAAGGGAAGTCGTGGCGCAGGGAGTCCAAAGATCGGTCCGTGGATTACGAAGGACAGGGGTTTCGGCGGTCAAGATCGATTAGATCG TCTGCTAGCGATCACGTGGACGACTGGGAGAATTGA
AA sequence Show only first row Show all	>Lus10018672 pacid=23176207 polypeptide=Lus10018672 locus=Lus10018672.g ID=Lus10018672.BGIv1.0 annot-version=v1.0 MTIDVDQSCVANLASTCSDLRTLLQTSSKMEDILRQMDDRFEVMDDNLATTSRRIAPLQSLAMASKALDTRINRAVSPAFALLDGFKRSESLQKKLIHLS GKLEAERKSKKRMRLLLKYVDHVHQLSSAIDSIFQDGEPAIQKLQEVVEFLSRTKATDHFRTHRLRETLVTLKALYENEVDAMKFEGFLDQTLLNLQDEY KQILQQLKHQNLGDSRREDDNDDDEDGDVALSSDLGTDLEIEILKRISEILCSNDCLDICIDIFVKVRYRRAAKALMKLNPDYLRTYTPEEIDEIEWEAL ETAISHWIQHFELALKTVFISEKKLSHRVLEGILDGAVWLECFIKIADKIMAVFFRFGEGVARSSKEPQKLFKLLDMFDSLEKIKPEFTAIFEGEAGFDI CSRYRELEKLLVHSSSKVFWEFGLQIEGNSDGFPPPQDGSVPKLVRYAINYLKYLATEGYSVPMAKVLRTEQIWKAGILSKPDSDENLLKEAVTNILEAL QRNIESKRSRYKAKVLPHIFAMNTYWYIYMRKLLGEQYMKQKYKLVAEESAYVYQKQAWGPLVRLLEAEDMKRSHGNLQQDSGAAVRAKVEVFLKALEAI SERHRSSYTIPDGVLREQIRGATVKVVVPAYTDFLNNYPRATQVKSFPSPDSIQAMVGRVFNYGEHYPAAGEGKSWRRESKDRSVDYEGQGFRRSRSIRS SASDHVDDWEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10018672 [exp]	0	1
AT2G38900			Serine protease inhibitor, pot...		Lus10003225 [exp]	2.0	0.8755
AT2G33735			Chaperone DnaJ-domain superfam...		Lus10014901 [exp]	3.5	0.8581
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	5.5	0.8585
AT3G02220			unknown protein		Lus10019392 [exp]	6.7	0.8400
AT1G06060			LisH and RanBPM domains contai...		Lus10005633 [exp]	7.2	0.8380
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10014329 [exp]	8.0	0.8729
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10025105 [exp]	8.2	0.7871
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	8.3	0.8739
AT4G27570			UDP-Glycosyltransferase superf...		Lus10001858 [exp]	8.7	0.8295
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	9.8	0.8310

Compare expression of checked genes

Lus10018672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.