Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12350 342 / 1e-114 F-box family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007749 [exp] 482 / 8e-172 AT3G12350 217 / 3e-68 F-box family protein (.1.2) Lus10007750 [exp] 192 / 6e-60 ND 103 / 1e-27 Lus10010606 [exp] 150 / 2e-44 AT3G12350 106 / 6e-29 F-box family protein (.1.2) Lus10010607 [exp] 123 / 3e-34 AT3G12350 72 / 4e-16 F-box family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G117900 [exp] 527 / 0 AT3G12350 374 / 7e-127 F-box family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10018673 pacid=23176182 polypeptide=Lus10018673 locus=Lus10018673.g ID=Lus10018673.BGIv1.0 annot-version=v1.0 ATGGATTCTTCATCATCCTACTCGTTTGCCGACTTCCCAGAGGACGTTCAGCACTGCACCCTTTCTTTTCTTTCCCCGACCGATATCGTCAGTTTCTCCT GCACTTCCAAGCGATTCGCCCCCCTTTGCCACACCGACAGCAAGCTCTGGTACGCTCTTTGCGACAGGCGATGGGGCTCCAACACCCAGATCAGAAATTG GGGGGGTGGTAACATCTCCTTCAACCTCCTCTACAAGACCCTGAACAAATGGGAGAATTTCATCGGCTTCTGGCGTCGCTGCGGCCAAACCCAGCAGAAA ATCAACTCCTCCGCCGCCGGAGTGGTAAAACCGCCGTCTCTTGTCTTCTTCGAGTGGGGGCCCTCCTTCCTCCGTGGTTTCAGAGTCTCTCCCTCTCAAA ACGGTACCTATAGCGTTCTCAAGTCGCCATTTCTTTTCATGGGGATATCGCCGGAGGGTCAGATTGTGAACTACCTCGATCCGGAAGGGTATACTAGAAT CTCCGGCGAATTAGGGTTACCAGAGACGGATTTGGTTCCTGTGAATGTGAGTTTTATTGGGAGTCTCCATTTTAGCTTGGAGGATGAGAGTTTTGGTGTA GTGAATAATGGATCTCCTCCTCCGGCGAGCTTGCCTGAAATGGTGGAAATGTACCAGTACTACGCGAATCGGTCGAGTCCTCGTGTGGATCGGTCGTGGA GAAGGCAGAGGAGGAGGGAAAAGGAGAGGCTGTTTAGGAAGAGATGGGAGACTGAGCATTATTTGAAGATTGTTGATTGCTCGCCCACGCCTGGCCGCCC GTTGCAGGGGCTATGGAAGGGAATTTGTGATGAAATGAAGTTAGAGTTTTATTTGGTGGAATATGATGGTACTGGTATCTCATGTAGAAGGCTAGGGGAC TTATCTGATCGTCTCTCTAGTTGTATGCCAGTGTTTTGGACATCAAATCCAACATTCATTGATTCCCCACTTTCACCTGAGGAGCTGCATCTATACGACA GTCGGATACATATTCGATCATCTCCTGATCATAATTGCGCGGATGATGAGGTTGTTTTGCGTGTCATGTACATCAACTCAAGTTTCGACCTAGTAATTCC TGGCTTGGAAGGAGCTGAAGCAAATACTTGGCGAGTTGAGGGAAGGATTTGGCAGTACACGAATGGAACGTTCGGGTTTGGCTTTCTTCGTGACAATTTC ATTGTAGACCTAAAGCCAATTGCCCAAAATGGTTGTCTTCTTGATACCTTGGATCCGTGTAGTGATTGA
AA sequence Show only first row Show all	>Lus10018673 pacid=23176182 polypeptide=Lus10018673 locus=Lus10018673.g ID=Lus10018673.BGIv1.0 annot-version=v1.0 MDSSSSYSFADFPEDVQHCTLSFLSPTDIVSFSCTSKRFAPLCHTDSKLWYALCDRRWGSNTQIRNWGGGNISFNLLYKTLNKWENFIGFWRRCGQTQQK INSSAAGVVKPPSLVFFEWGPSFLRGFRVSPSQNGTYSVLKSPFLFMGISPEGQIVNYLDPEGYTRISGELGLPETDLVPVNVSFIGSLHFSLEDESFGV VNNGSPPPASLPEMVEMYQYYANRSSPRVDRSWRRQRRREKERLFRKRWETEHYLKIVDCSPTPGRPLQGLWKGICDEMKLEFYLVEYDGTGISCRRLGD LSDRLSSCMPVFWTSNPTFIDSPLSPEELHLYDSRIHIRSSPDHNCADDEVVLRVMYINSSFDLVIPGLEGAEANTWRVEGRIWQYTNGTFGFGFLRDNF IVDLKPIAQNGCLLDTLDPCSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12350			F-box family protein (.1.2)		Lus10018673 [exp]	0	1
AT5G27930			Protein phosphatase 2C family ...		Lus10020670 [exp]	5.5	0.7171
AT3G47300		SELT	SELT-like protein precursor (....		Lus10002479 [exp]	8.3	0.7514
AT5G27930			Protein phosphatase 2C family ...		Lus10029874 [exp]	20.0	0.6972
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10032364 [exp]	26.4	0.6474
AT3G27030			unknown protein		Lus10032030 [exp]	26.6	0.6905
AT5G67220			FMN-linked oxidoreductases sup...		Lus10006260 [exp]	30.4	0.6877
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10030857 [exp]	34.1	0.6556
AT2G32070			Polynucleotidyl transferase, r...		Lus10003635 [exp]	34.2	0.6960
					Lus10023424 [exp]	36.3	0.6837
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10023699 [exp]	44.7	0.6567

Compare expression of checked genes

Lus10018673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.