Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10200 324 / 1e-114 LIM WLIM1, SF3 WLIM1, GATA type zinc finger transcription factor family protein (.1) AT3G55770 211 / 8e-70 LIM WLIM2b WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) AT2G39900 209 / 7e-69 LIM WLIM2a WLIM2a, GATA type zinc finger transcription factor family protein (.1) AT1G01780 192 / 4e-62 LIM PLIM2b PLIM2b, GATA type zinc finger transcription factor family protein (.1) AT2G45800 192 / 5e-62 LIM PLIM2a PLIM2a, GATA type zinc finger transcription factor family protein (.1.2) AT3G61230 183 / 9e-59 LIM PLIM2c PLIM2c, GATA type zinc finger transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007748 [exp] 399 / 8e-144 AT1G10200 308 / 5e-108 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10027305 [exp] 283 / 1e-98 AT1G10200 280 / 2e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10039010 [exp] 284 / 2e-98 AT1G10200 285 / 2e-99 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10042140 [exp] 277 / 6e-96 AT1G10200 280 / 2e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10004230 [exp] 276 / 1e-95 AT1G10200 281 / 1e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10010455 [exp] 264 / 1e-90 AT1G10200 277 / 3e-96 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10043462 [exp] 257 / 8e-88 AT1G10200 260 / 2e-89 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10034123 [exp] 239 / 2e-80 AT3G55770 244 / 1e-82 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Lus10003822 [exp] 230 / 4e-74 AT3G03220 409 / 4e-143 EXPANSIN 13, expansin A13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G118000 [exp] 358 / 5e-128 AT1G10200 325 / 7e-115 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.014G015600 [exp] 357 / 1e-127 AT1G10200 327 / 8e-116 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.001G292900 [exp] 322 / 1e-113 AT1G10200 317 / 9e-112 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.009G087200 [exp] 318 / 3e-112 AT1G10200 316 / 2e-111 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.015G072400 [exp] 277 / 4e-96 AT1G10200 277 / 5e-96 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.012G077200 [exp] 275 / 5e-95 AT1G10200 268 / 2e-92 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.010G193800 [exp] 218 / 1e-72 AT3G55770 323 / 2e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.008G063600 [exp] 217 / 2e-72 AT3G55770 324 / 1e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.003G124300 [exp] 191 / 6e-62 AT3G61230 264 / 2e-90 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Potri.001G107100 [exp] 189 / 5e-61 AT3G61230 256 / 6e-87 PLIM2c, GATA type zinc finger transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00412 [flax] [poplar] LIM LIM domain
Representative CDS sequence Show only first row Show all	>Lus10018674 pacid=23176229 polypeptide=Lus10018674 locus=Lus10018674.g ID=Lus10018674.BGIv1.0 annot-version=v1.0 ATGGCGTTTGCTGGTACAACTCAGAAATGTATGGCATGTGAAAAGACTGTTTATCTTGTTGACAAGTTGACGGCCGATAACCGGATTTATCACAAGGCCT GCTTCAGGTGCCATCACTGCAGAGGAACTCTCAAGCTTGGCAATTACAATTCCTTTGAAGGAGTGCTCTACTGCAGGCCACACTTTGATCAGCTCTTCAA AAGAACTGGAAGTCTAGATAAAAGCTTTGATGGAACTCCCAAGATTGCAAAACCAGAGAAACCTATTGACACTGAGAAACCTATAGTAGCTAAGGTGTCA AACATGTTTGGTGGAACTAGAGAGAAATGTTTCTGCTGCAAGAACACTGTCTACCCAACTGAGAAGGTATCGGTGAATGGAACTCCTTACCACAAAAGCT GCTTCAAATGTATCCATGGAGGGTGCGTGATTAGTCCGTCCAACTACATCGCACATGAAGGCCGGCTCTACTGCAAACACCACCACAATCAGCTCATCAA GGAAAAGGGTAACTTGAGCCAGCTTGAGGGTGATGCTGATCATGTTCCTGCAAATCAGAAAGCTGCTAGTATTGCTGCAACAGAAGTATCTGCTGAATCG TAA
AA sequence Show only first row Show all	>Lus10018674 pacid=23176229 polypeptide=Lus10018674 locus=Lus10018674.g ID=Lus10018674.BGIv1.0 annot-version=v1.0 MAFAGTTQKCMACEKTVYLVDKLTADNRIYHKACFRCHHCRGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSFDGTPKIAKPEKPIDTEKPIVAKVS NMFGGTREKCFCCKNTVYPTEKVSVNGTPYHKSCFKCIHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGNLSQLEGDADHVPANQKAASIAATEVSAES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	0	1
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	1.0	0.9563
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006474 [exp]	2.4	0.8608
AT1G69080			Adenine nucleotide alpha hydro...		Lus10036814 [exp]	2.6	0.8165
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	3.5	0.8426
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10023190 [exp]	4.2	0.8175
AT5G28150			Plant protein of unknown funct...		Lus10042600 [exp]	4.7	0.8114
AT1G30700			FAD-binding Berberine family p...		Lus10038439 [exp]	4.9	0.8107
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006475 [exp]	5.0	0.8176
AT2G46690			SAUR-like auxin-responsive pro...		Lus10008845 [exp]	5.3	0.8179
AT1G29530			unknown protein		Lus10011974 [exp]	6.3	0.8120

Compare expression of checked genes

Lus10018674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.