Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22370 469 / 5e-168 QQT1, EMB1705 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G12790 181 / 4e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) AT4G21800 78 / 6e-16 QQT2 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007747 [exp] 440 / 3e-157 AT5G22370 396 / 1e-140 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041086 [exp] 177 / 8e-54 AT4G12790 435 / 9e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10036411 [exp] 181 / 4e-53 AT4G12790 444 / 5e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10040022 [exp] 75 / 9e-15 AT4G21800 542 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019602 [exp] 75 / 1e-14 AT4G21800 545 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G015700 [exp] 508 / 0 AT5G22370 462 / 6e-166 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G174200 [exp] 176 / 1e-53 AT4G12790 432 / 5e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.008G103000 [exp] 78 / 6e-16 AT4G21800 527 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G148000 [exp] 77 / 1e-15 AT4G21800 555 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF03029 [flax] [poplar] ATP_bind_1 Conserved hypothetical ATP binding protein
Representative CDS sequence Show only first row Show all	>Lus10018675 pacid=23176274 polypeptide=Lus10018675 locus=Lus10018675.g ID=Lus10018675.BGIv1.0 annot-version=v1.0 ATGGTGTTTGGTCAAGTAGTGATCGGCCCTCCTGGTTCCGGCAAAACCACTTACTGCAATGGCATGTCTCAGTTCCTCCCTCTCATCGGCAGGAAAGTTG CTGTCATCAATTTGGATCCCGCCAATGATTCCTTGCCTTACGATTGTGCCATAAATATCGAGGATCTCATCAAACTAAGTGATGTAATGGCAGAGCATTC TCTCGGCCCAAACGGGGGTCTAGTTTACTGCATGGACTATTTGGAGAAGAACATTGACTGGTTGCAATCCAAGTTGCAACCTTTGTTGAAAGACCACTAT CTTGTCTTTGATTTCCCTGGTCAGGTTGAACTGTTCTTCCTTCATTCAAATGCCAAGAACATTATTATGAAGCTTATCAAGAAGTTGAACCTTAGGTTGA CTGCGGTACATTTAGTTGACGCACATCTCTGTAGTGATGCAAACAAGTATATTAGTGGATTGCTGCTATCATTGTCTACCATGATTCACATGGAACTCCC GCACATCAATGTCTTGTCTAAGATCGATCTAATTGAGAGCTATGGAAAGTTGGCTTTCAACTTGGATTTCTACACGGACGTGCAAGACTTGTCATATTTG CAGCATCATATTGAACAGGATCCTCGTGCAGCAAAGTACAGAAAACTTACAAAGGAGCTGTGCGAGGTTGTGGAAAATTACGGCCTCGTTAATTTCACAA CTCTAGACATTCAGGCATGCCGAACACTTTTTGACAAAGAAAGTGTTGGAAATCTTGTGAAATTGATAGACAAGAGCAACGGTTACATCTTTGCTGGTAT TGATGCCAGTGCTGTTGAATTCAGCAAGATTGCAGTGCGGGAAGTTGATTGGGATTATTACAGATATCCTTTTCTCATTCTCTACATTCGTATCACAGTT GCAGCAGTGCAAGAGAAGTACATGAAAGATGAAGATGCATTCGATGACAGCGACAAGCCTGATATTTAG
AA sequence Show only first row Show all	>Lus10018675 pacid=23176274 polypeptide=Lus10018675 locus=Lus10018675.g ID=Lus10018675.BGIv1.0 annot-version=v1.0 MVFGQVVIGPPGSGKTTYCNGMSQFLPLIGRKVAVINLDPANDSLPYDCAINIEDLIKLSDVMAEHSLGPNGGLVYCMDYLEKNIDWLQSKLQPLLKDHY LVFDFPGQVELFFLHSNAKNIIMKLIKKLNLRLTAVHLVDAHLCSDANKYISGLLLSLSTMIHMELPHINVLSKIDLIESYGKLAFNLDFYTDVQDLSYL QHHIEQDPRAAKYRKLTKELCEVVENYGLVNFTTLDIQACRTLFDKESVGNLVKLIDKSNGYIFAGIDASAVEFSKIAVREVDWDYYRYPFLILYIRITV AAVQEKYMKDEDAFDDSDKPDI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Lus10018675 [exp]	0	1
AT4G39690			unknown protein		Lus10016813 [exp]	18.2	0.7595
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10007851 [exp]	21.5	0.7952
AT1G04945			HIT-type Zinc finger family pr...		Lus10026116 [exp]	25.6	0.7774
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10018033 [exp]	28.9	0.7909
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10029297 [exp]	69.6	0.7655
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	71.4	0.7658
AT5G62290			nucleotide-sensitive chloride ...		Lus10038909 [exp]	77.1	0.7649
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10017739 [exp]	81.3	0.7611
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10013088 [exp]	85.7	0.7599
AT2G37050			Leucine-rich repeat protein ki...		Lus10015057 [exp]	97.6	0.7241

Compare expression of checked genes

Lus10018675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.