Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59600 369 / 7e-128 ZCW7 ZCW7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007745 [exp] 574 / 0 AT1G59600 406 / 2e-142 ZCW7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G118300 [exp] 416 / 3e-146 AT1G59600 367 / 2e-127 ZCW7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018676 pacid=23176270 polypeptide=Lus10018676 locus=Lus10018676.g ID=Lus10018676.BGIv1.0 annot-version=v1.0 ATGGGGATCCGGTCATTGGAATCGCTGCCGCCGACGGAGACACTGGAGATCGAGAATGGGCTATCGCTAGCGCCTCGAGTAAAGCTGGAGCTGGTCGTCC ATCCGACGCCGTCCTCCGTCGCCAAACAGATGGACGAGTGGAAGCTGAAGCGCGCTCTGACGGAGTATCTGAAGACTTCGCTCTCAGTCTCCATCGCGGT CCCGGAGGAGGACCTGGAGTTCAGGAAATACAAGGACCTGAAGAAGCGGAAACGCGAGGATCCCGTGGCGCACGGCACTCTTTCGATTCGAGACTTAGGG TTCCTGAGCGGGAAGAAGAGAGGCGTAGAAGAGGGGAAAGAGGAAGCCGTCAAGGAAATCGAGAAGAAGTTTCTGGAATGGAGGAAGTACATCGTTGAGA AGCTGGATGGAATCGAGCTGAACTTAGAAGGAGATGAGTATAAACTGAGTGTTGCTGTGCCGGCGTCGGATGATTTTGAAGCAATGAAGAAAGATTGGGC GGAGTTCTATGCTTTTGGCAATCGAGGGTACGCAAGAGGAGGAAAGGCAGAGCCAGATACAATCGTCCTAAGAGGGGTACCATCTCGATGGTTTGCCGAG CCGAGAGTTTCTTCAAAGCCTTCAATGCTCGTTACTCATACCATTTTCTCGGCGTTTGGGAAGATAAGGAATCTTAGTGTGGTTGAGGATGTTGAAGATA AGGTCGAGGGAGACATAATTTCCGGTCTGCATTGCAAGATCGTCGTTCAGTTTGACAAACACACAGATTTCTGCAACGCTCTTAGGGTGTTGTGTGGCCG TTCGATGCAAAAGCAAGGATCTCGATTAAAAGCGGATTACGAGGTTAGGTGGAGCAAAGAAGGTGTCTTCCAGAGTGCAAGAAATGAAGGTGTAGAAAGC AAGAGCCGCACAGCAGTGAGAAATGAAGCACCACCTCCCAGAGGTGAGCCATATGTTTCAAGATTCAGCTCAGAGGATACGCGGCGAAAGAGATTCAAGG AATAA
AA sequence Show only first row Show all	>Lus10018676 pacid=23176270 polypeptide=Lus10018676 locus=Lus10018676.g ID=Lus10018676.BGIv1.0 annot-version=v1.0 MGIRSLESLPPTETLEIENGLSLAPRVKLELVVHPTPSSVAKQMDEWKLKRALTEYLKTSLSVSIAVPEEDLEFRKYKDLKKRKREDPVAHGTLSIRDLG FLSGKKRGVEEGKEEAVKEIEKKFLEWRKYIVEKLDGIELNLEGDEYKLSVAVPASDDFEAMKKDWAEFYAFGNRGYARGGKAEPDTIVLRGVPSRWFAE PRVSSKPSMLVTHTIFSAFGKIRNLSVVEDVEDKVEGDIISGLHCKIVVQFDKHTDFCNALRVLCGRSMQKQGSRLKADYEVRWSKEGVFQSARNEGVES KSRTAVRNEAPPPRGEPYVSRFSSEDTRRKRFKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59600		ZCW7	ZCW7 (.1)		Lus10018676 [exp]	0	1
AT3G52220			unknown protein		Lus10038762 [exp]	2.8	0.9483
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	5.9	0.9082
					Lus10009362 [exp]	6.2	0.9137
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10019388 [exp]	8.3	0.9107
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	12.4	0.9037
AT3G27340			unknown protein		Lus10022323 [exp]	12.5	0.8855
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10024569 [exp]	12.6	0.9046
AT1G04555			unknown protein		Lus10014458 [exp]	16.2	0.9082
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10015388 [exp]	21.2	0.8984
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10016651 [exp]	21.5	0.9080

Compare expression of checked genes

Lus10018676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.