Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27460 453 / 1e-152 NPGR1 no pollen germination related 1 (.1) AT2G43040 315 / 5e-99 NPG1 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) AT4G28600 276 / 9e-84 NPGR2 no pollen germination related 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011793 [exp] 323 / 9e-102 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Lus10023748 [exp] 321 / 7e-101 AT4G28600 753 / 0.0 no pollen germination related 2 (.1) Lus10020725 [exp] 318 / 3e-100 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10022897 [exp] 317 / 2e-99 AT4G28600 736 / 0.0 no pollen germination related 2 (.1) Lus10024926 [exp] 306 / 4e-95 AT4G28600 726 / 0.0 no pollen germination related 2 (.1) Lus10003618 [exp] 296 / 3e-91 AT4G28600 728 / 0.0 no pollen germination related 2 (.1) Lus10029803 [exp] 293 / 2e-90 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10008236 [exp] 293 / 3e-90 AT4G28600 738 / 0.0 no pollen germination related 2 (.1) Lus10033595 [exp] 286 / 3e-88 AT2G43040 926 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G016000 [exp] 614 / 0 AT1G27460 841 / 0.0 no pollen germination related 1 (.1) Potri.002G118500 [exp] 602 / 0 AT1G27460 868 / 0.0 no pollen germination related 1 (.1) Potri.002G055200 [exp] 338 / 9e-108 AT2G43040 1035 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G259300 [exp] 333 / 1e-105 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Potri.010G068700 [exp] 306 / 2e-95 AT4G28600 708 / 0.0 no pollen germination related 2 (.1) Potri.008G169500 [exp] 295 / 4e-91 AT4G28600 699 / 0.0 no pollen germination related 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018678 pacid=23176186 polypeptide=Lus10018678 locus=Lus10018678.g ID=Lus10018678.BGIv1.0 annot-version=v1.0 ATGTCAATGCACTCCGTCACTCTTCTTCTCGAAGCTCTCTTCCTCAAGGCAAAGTCACTCGAGCAATTGGCACTTTTCACAGAGGCTGCAAAGGAGTGCA AGGTGATCTTGGAAATAGTTGAAGCAGCCCTACCAAACGGCATGCTTCAAGGAATTCCCAGGCACAACAAGTTGGAGGAGATGTCTCACAAGGCGTTAGA GTTGCTACCAGTTCTGTGGACCAAGGCAGGGCATCTTGACGATGCCATTGCCTCGTACCGAAGGGCTTTACTCAAGTCGTGGAATTTGGATCCATGGAGG TTGGCCAAAGTGCAAATGGACTTGGCTTCCATGTTACTCTATGGTGCTGTTGAAGCAAAACTCCCACCTTACATGCAACTTTGCGGCCAGGCCACTCCCA AAAGCAATACAGAGGAAGCAATCCTTTTGTTGTTGGTATTGATGAGTAAAGTTGCTTCTGGGGAAATCAAATGGGATAAAGAAATCATGGACCATCTGAC TTATGCACTCACCATTACTGGGCAGTTTGAGTTGTTAGCAGAGCATGTGGAGCAAGCTCTTCCTGGTGTTTACGACAGATCCGAGAGGTGGTATCTACTT GCTCTGTGTTACAGTGCTGCTGGCCAGGATGAAACAGCTTTCAATCTTTTAAAGAAAGTTTCTGGTCGTTCAGAATCCAACCGCAAACCTCACGTAGCTT CTTTTCTTCTGGGGGCAAAGTTGTGCTCTCGGAACAAAATTCACTCCCAGGAAGGTATTGATTTTGCTCGGATAGTACTCGATCACAGTGAGCATTTCAA ACCTCAAGCTCGGAAATTCCTTGGAATCTGCTGTGGGGATGCAGCAAGGACTTCCATATCTGATATAGAGAGGAATCTGCTGCAGAAGAAGGCTCTGGGT TATCTAAATCATGCAGCTCTTAGCTGGAAGGAGGATCCAGAAGTCTTATACAGCCTTGGACTGGAGAACTCTATGCAAAGAAATCTAGATGCAGCTTTCC AGAATGCAATGACGTATGCTGAAGTAACGTCTGGGAGCTCGGTGAAAGGGTGCAAGCTATTAGCCCATATAATTTCTTCAGAACAGCGGTTCAAGGATGC GGAAACAGTGGTTGAGTTTGCGTTGGATGAGTCTGGAAGGATGGATCAATTGGAGCTTCTTAGATTGAAGGCTGTTCTTAGAGTCGCCCAGGGACAGCCC AAACAAGCAATAGAGACGTACAGATTGTTACTATCTCTTATTCAGGGGCAGCGTGATCTCCAGACCAAGAGCCCTGCTCAAGCACATATCTCTGCAACTG AGGTTATATATATATATATATCGACTACAAACATAGTTGAGGTGGAAAAATGTTTTGCTCATTGGGAGTTCTGTTGTGTTCCTTGTAGGAACATCGCTGG AAGCACAAGAACTATACAGGGAAGCGCTGGTTTCTTTCTCAATGTCATTATCAATAGAACCGGACTATGTACCGAGCCTCGTGTCGACAGCAGCGGTGCT GATGAAGCTTGGCGGGGAATCCATTCCGATTGCAAGAAGCTTTCTAATGAACGCACTGCGTTTGGATCCAACAAATCACGAGGCATGGATGAACCTTGGG TTGATTTCAAAGCAGCAAGGCTCGTTGCAGCAAGCTGCAGACTGTTTTCAGGCCGCTTATGA
AA sequence Show only first row Show all	>Lus10018678 pacid=23176186 polypeptide=Lus10018678 locus=Lus10018678.g ID=Lus10018678.BGIv1.0 annot-version=v1.0 MSMHSVTLLLEALFLKAKSLEQLALFTEAAKECKVILEIVEAALPNGMLQGIPRHNKLEEMSHKALELLPVLWTKAGHLDDAIASYRRALLKSWNLDPWR LAKVQMDLASMLLYGAVEAKLPPYMQLCGQATPKSNTEEAILLLLVLMSKVASGEIKWDKEIMDHLTYALTITGQFELLAEHVEQALPGVYDRSERWYLL ALCYSAAGQDETAFNLLKKVSGRSESNRKPHVASFLLGAKLCSRNKIHSQEGIDFARIVLDHSEHFKPQARKFLGICCGDAARTSISDIERNLLQKKALG YLNHAALSWKEDPEVLYSLGLENSMQRNLDAAFQNAMTYAEVTSGSSVKGCKLLAHIISSEQRFKDAETVVEFALDESGRMDQLELLRLKAVLRVAQGQP KQAIETYRLLLSLIQGQRDLQTKSPAQAHISATEVIYIYISTTNIVEVEKCFAHWEFCCVPCRNIAGSTRTIQGSAGFFLNVIINRTGLCTEPRVDSSGA DEAWRGIHSDCKKLSNERTAFGSNKSRGMDEPWVDFKAARLVAASCRLFSGRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27460		NPGR1	no pollen germination related ...		Lus10018678 [exp]	0	1
AT1G27460		NPGR1	no pollen germination related ...		Lus10018679 [exp]	1.0	0.8775
AT4G28600		NPGR2	no pollen germination related ...		Lus10007743 [exp]	4.2	0.8042
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10004454 [exp]	22.8	0.7497
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10028635 [exp]	28.6	0.7886
AT2G31580			tRNAHis guanylyltransferase (....		Lus10041070 [exp]	31.4	0.7613
AT5G60370			unknown protein		Lus10023343 [exp]	33.6	0.7763
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10001814 [exp]	33.9	0.6859
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003106 [exp]	34.5	0.7940
AT1G03980		ATPCS2	phytochelatin synthase 2 (.1)		Lus10008241 [exp]	43.9	0.7917
AT2G32000			DNA topoisomerase, type IA, co...		Lus10021692 [exp]	48.4	0.7558

Compare expression of checked genes

Lus10018678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.