Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27840 629 / 0 ATCSA-1 Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT1G19750 605 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18140 62 / 2e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G16780 60 / 1e-09 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT5G52820 60 / 2e-09 WD-40 repeat family protein / notchless protein, putative (.1) AT1G10580 59 / 3e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT1G71840 59 / 4e-09 transducin family protein / WD-40 repeat family protein (.1) AT5G50230 59 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 58 / 9e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G15550 57 / 9e-09 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007742 [exp] 868 / 0 AT1G27840 619 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10031629 [exp] 67 / 6e-12 AT1G71840 488 / 2e-172 transducin family protein / WD-40 repeat family protein (.1) Lus10042333 [exp] 65 / 2e-11 AT3G18140 572 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10033710 [exp] 65 / 8e-11 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10029221 [exp] 61 / 1e-09 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10007274 [exp] 59 / 2e-09 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10039597 [exp] 58 / 6e-09 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10013452 [exp] 59 / 7e-09 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10029493 [exp] 58 / 7e-09 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G016100 [exp] 717 / 0 AT1G27840 660 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.019G087200 [exp] 71 / 3e-13 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.016G052800 [exp] 62 / 2e-10 AT3G18140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G045500 [exp] 60 / 2e-09 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 58 / 6e-09 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 58 / 7e-09 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 58 / 8e-09 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G057600 [exp] 56 / 2e-08 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.009G058000 [exp] 54 / 1e-07 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.011G066600 [exp] 53 / 1e-07 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10018680 pacid=23176203 polypeptide=Lus10018680 locus=Lus10018680.g ID=Lus10018680.BGIv1.0 annot-version=v1.0 ATGTGGAGGGAAATTGCAGACAGAGAAGCGGGCAAAACCAGACCAAATTCCTTCAAAAGCCACATCGCATCCGGCTTGAGCTCCGATCTCCAGCTCTCTA ACCACAAAGACATCGTTTCTCCTCATCGAGGATCCGTTAATTCTCTCCAGGTTGATTTGACAGAGGGGAGATACTTGTTGTCCGGTGCAGCGGATGCCTC CGCCGCTGTTTTCGATGTTCAACGGCCGACGGAGTATGAAGGCGGAGGTGTTATCGCTAAGCACCGCCATCTATTTTCCATAGACAAGCAGCACAAGGCA GGGCATAAATTTTCCATTTCGACAGCGATATGGTATCCGATAGATACCGGTCTGTTCGTCACTGGTTCTTACGATCATTATATCAAAGTCTGGGATACCA ATAGCACGCAGGTCGTGATGAATTTTAAAATGCCTGGGAAGGTGTACCGAACTGCTATGTCTCCGTTGGCAACTTCTCATATGCTGATTGCCGCCGGGAC GGAAGATGTTCAAGTTCGACTTTGTGATATTGCCTCGGGGGCATTTGCCCATACACTTTCCGGTCACCGGGATGGTGTTATGACGGTAGAATGGTCTACT TCAAGTGAATGGGTTTTGGTTACTGGAGGATGCGATGGTGCTATACGGTTTTGGGACATTAGGCGGGCGGGGTGTTTTCGTGTCTTAGATCAATCCCGAA CTCAGCTAGGCAGGCGACCGCCCATCCCACGTCGCTCATTGATGAATAAGAAGAAAACTGTGAATGGGAATGGAGCAAAGCAGTCAGGTCTTGGTCGGAC TCCAGGAAAGGGAGCTGCTAAACAGAGGGTACACCCAGGGATGTTATCCACTCTAGATCGTGCTACTGCTCACTACGGTGCTGTGACAGCTTCAAAAATA ACTGAAGATGGCATGTACCTATTTAGTGCAGGGTCTGATTCAAGGATAAGGTTGTGGGACATTGAATCTGGCTGCAATACTCTTGTGAACTTTGAAACTG TGAGATTACAGACTAGTAAGCCAATGCAGCTGGCAACTTGCGGAGATTCCAAAATGGTTTTTGTTCCATGCATGACAGCCGTGAAAGCATTCGATGTTTG GTCGGGGAAAACATCCATGGTTCTTCGTGGCCATTATGAAAACGTGAATTGCTGTTGGTTTAGTTCCCAAGATCAGGAGCTGTACACAGGTGGGAATGAT AGACAAATTCTCGTCTGGTCTTCTTCATCCAAACCTCAGGAGGATGTCTGTGTGGCTGAAGATGGAGATAACTGGAGCGACTGA
AA sequence Show only first row Show all	>Lus10018680 pacid=23176203 polypeptide=Lus10018680 locus=Lus10018680.g ID=Lus10018680.BGIv1.0 annot-version=v1.0 MWREIADREAGKTRPNSFKSHIASGLSSDLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLLSGAADASAAVFDVQRPTEYEGGGVIAKHRHLFSIDKQHKA GHKFSISTAIWYPIDTGLFVTGSYDHYIKVWDTNSTQVVMNFKMPGKVYRTAMSPLATSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWST SSEWVLVTGGCDGAIRFWDIRRAGCFRVLDQSRTQLGRRPPIPRRSLMNKKKTVNGNGAKQSGLGRTPGKGAAKQRVHPGMLSTLDRATAHYGAVTASKI TEDGMYLFSAGSDSRIRLWDIESGCNTLVNFETVRLQTSKPMQLATCGDSKMVFVPCMTAVKAFDVWSGKTSMVLRGHYENVNCCWFSSQDQELYTGGND RQILVWSSSSKPQEDVCVAEDGDNWSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10018680 [exp]	0	1
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10037131 [exp]	1.4	0.9327
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10009080 [exp]	2.0	0.9254
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	5.0	0.9102
AT4G03420			Protein of unknown function (D...		Lus10018572 [exp]	10.8	0.8981
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10024270 [exp]	13.0	0.9062
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	13.2	0.8618
AT5G36930			Disease resistance protein (TI...		Lus10037406 [exp]	14.0	0.8758
AT1G23230			unknown protein		Lus10035997 [exp]	15.7	0.8782
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10042302 [exp]	16.1	0.9084
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004386 [exp]	17.1	0.9178

Compare expression of checked genes

Lus10018680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.