Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58610 288 / 2e-83 PHD finger transcription factor, putative (.1) AT5G36740 231 / 2e-63 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 226 / 6e-62 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT3G14980 221 / 4e-60 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT4G14920 215 / 4e-58 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 210 / 2e-56 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G63900 196 / 1e-53 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 144 / 3e-35 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 137 / 3e-33 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 134 / 4e-32 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007741 [exp] 1408 / 0 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10015266 [exp] 301 / 1e-86 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10042283 [exp] 286 / 2e-81 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10012522 [exp] 243 / 2e-70 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10006110 [exp] 236 / 1e-64 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 224 / 6e-61 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042602 [exp] 218 / 2e-58 AT5G36740 607 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10025386 [exp] 211 / 3e-57 AT5G58610 271 / 4e-77 PHD finger transcription factor, putative (.1) Lus10022053 [exp] 213 / 5e-57 AT5G36740 617 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G118600 [exp] 404 / 2e-127 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.009G072600 [exp] 327 / 2e-96 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.010G087700 [exp] 233 / 8e-64 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G392801 [exp] 231 / 4e-63 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 228 / 3e-62 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 224 / 6e-61 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 210 / 1e-58 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) Potri.002G051400 [exp] 216 / 3e-58 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.006G083600 [exp] 134 / 4e-32 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 100 / 1e-21 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10018681 pacid=23176164 polypeptide=Lus10018681 locus=Lus10018681.g ID=Lus10018681.BGIv1.0 annot-version=v1.0 ATGGCGGTGGACAAGCAGTTAGCCACCAAGACCCATCCTTTCCAGCTTAACCAGAAGGTGGAAATCAAGACCTTTGAGGTGGGTTTCGAAGGCTCCTGGC ACATGGCCACCATCGTCCTCTCAGACGAACGGTGTTTCCACGTCAAATACGACCATGCACTGTTTCTCGACGACGGTCCTGAGCGGATTGTGGAAGTGAT TTCCCCTTTACCTGGTTCCATATCCACTCGATTGAGGCCCATCCCCCCTCCGGCCACTTGCGGCCTCCTCGGTTTCACTTACGGTCTCTGCGTCGACGTC TGGAGACACAATGCCTGGTGGGAGGCCGTCGTCGCCGATCACCTCAACCAGTCAGATCAGAGGATCGTCTTCTTGATGGATTCCTGCAGGGAGATTCGGG TCCGAATCGACAATATGAGGGTTACGCAGGACTGGGAATCCTCCGCCGGAGTTTGGAGGCGGCGTGGGAATTGGCCGTTGATTCAGTGGATCGGCTTGAG CGTCAACGGACCCACACTCTTGCCAGATCAAGAATCCGACTACGGCGGATTAGAAATCGGCAAACTGGAAACGGAAAGTGAAGAGCGGCAGGACATGAAT ACGACGCCGTTTAGCCATAATGCGGGGGAGGAGACAAAGGGGAAGAAAAGGCGGAGCTGGGAGCCGGTCGGGTCGGATCTTTTAGCAGGACCCGAGTTCT GCCCGAGATTCGTAACGGAATACGCTTCGTTCGGTCCCGATAAGCGGCCGCCGGAGACTGCTGTGATGGGTGTAAGGAAGCATCTGGCGGCGTTGGGATG GAAGATCGAGTACAAGAAGGAAAAGACTGCTTACAGATTTCGATACATCTCTCCCGGCGAAACCCTAACTTATTTTTCTCTTCGACTCCTCTGTCAGGAT TTGAGAGAACCAGTCCGGGGAAACTCCCAAACCCCAAAGAGAAATAAAAGGAATAGAGAACCTGACACTAATTCTGATTCTGAAAGATGCACCAAAAAAA GAAGCAAGTTGGATAATCAGTGTCATGAAGAAGAAGGTGCAAATTCTGATTGTGAATTCGGATGGGCTTCTTCTCCTGATTCGGTCCTCAGGCCACTGAG GGCTTCTGTTTCTACGAGATCGCAGCAGCAGAAGAAGAAGACATTGATTCCTGACGAAGAATGTGGAGTCGGATCAACGACTGGAACGGTTAGAATCAAG CTCAACGCGGCCAGGAAGGCATGTTTGTTGCTGTCTACACTGATAGACACCAACCTGTATCTTCTCGATGCAGAAGTGAGATGTCATAGCAAGAACATTC TGAAGAAAGGAATCTTAAAGCGGGACGGGATCCATTGTCGATGCTGCAACAAATGCTACAGCCTGGCAGGTTTCGAGAGTCATAGTGGGAGCAAGAAGCA CAGACCGGCAGCAAGCATTTTCCTAGAAGATGGCAAGTCTCTGTCAGAATGTTATGGCAAAATCCTGAAGAAGAGGCGGAGGGGAGCCAGGAAGAAGAAG AGTGAAGAGTTGGAGGAGGAAGATGGAGGAAATAAAGACCCTAATGACTTGATTTGCTCAGTCTGTCGTGATGTTGGCGATTTGTTGTGCTGTGATAGTT GCCCATCTTCGTTTCATCACACTTGCGTCGGCCTGGAGAAGCTTCCTGATGGGGACTGGTTCTGCCCGTTCTGCTGCTGTGACATTTGCGGCCAACTCAA TTGCGGAGACAGTAATGATGATCAGCTTCTGAGCTGCGATCACTGCCAGCTCAAGTTCCATGGTGGATGTTTGACGAAGAAAGGGTTCGCCGAGCCTAAA AGGAGATCCGAGAAGAGGAATTGGTTTTGTAGCGTGGAGTGTGGAACCGTGTTCTCAGGACTACAGGGGCTAGTGGGGAAACCCATATCTGTAGGCGAAG ACGATCTCACCTGGACACTGTTGAGGTTGAGCGAAGAAGAGAGTTCAGAGACGAGAACGAAACTCAGTTCGGCCATAGATGTTCTGCACGAATGCTTCAA GCCGTTCAAGGATAATTTCTCAGGGACGGACATTGTTGAGGACCTGACATTCAGCAAAAGGTCGGACCTCCAGAGACTCAACTTCCAGAGATTCTACACA ATTGTGATCCAGAGGAGAGGGGAAGTGATGAGCTCCGCTAATGTCAGACTCTTGGGGAAGATGCTGGCGGAAATGCCTCTAATTGGCACAAGGTTTCAGT ACAGGGGACAAGGTTTGTGCAGAGTGCTGTTAAATGAGTTGGAGAAGCAGCTTAAGAAGTTTGGAGTGGAGAAGTTGCTGTTGCCGGCTGCTCATAGCGT ACTTGACATGTGGAGGGACACCTTCGGGTTCTCTGAACTTGGCTCTGAAGACAGGAAGCTCGTTGGCTGTAGATTCATGGAGATTGAAGGTACTGTCACT TGCCAAAAGCTTATCGTATAG
AA sequence Show only first row Show all	>Lus10018681 pacid=23176164 polypeptide=Lus10018681 locus=Lus10018681.g ID=Lus10018681.BGIv1.0 annot-version=v1.0 MAVDKQLATKTHPFQLNQKVEIKTFEVGFEGSWHMATIVLSDERCFHVKYDHALFLDDGPERIVEVISPLPGSISTRLRPIPPPATCGLLGFTYGLCVDV WRHNAWWEAVVADHLNQSDQRIVFLMDSCREIRVRIDNMRVTQDWESSAGVWRRRGNWPLIQWIGLSVNGPTLLPDQESDYGGLEIGKLETESEERQDMN TTPFSHNAGEETKGKKRRSWEPVGSDLLAGPEFCPRFVTEYASFGPDKRPPETAVMGVRKHLAALGWKIEYKKEKTAYRFRYISPGETLTYFSLRLLCQD LREPVRGNSQTPKRNKRNREPDTNSDSERCTKKRSKLDNQCHEEEGANSDCEFGWASSPDSVLRPLRASVSTRSQQQKKKTLIPDEECGVGSTTGTVRIK LNAARKACLLLSTLIDTNLYLLDAEVRCHSKNILKKGILKRDGIHCRCCNKCYSLAGFESHSGSKKHRPAASIFLEDGKSLSECYGKILKKRRRGARKKK SEELEEEDGGNKDPNDLICSVCRDVGDLLCCDSCPSSFHHTCVGLEKLPDGDWFCPFCCCDICGQLNCGDSNDDQLLSCDHCQLKFHGGCLTKKGFAEPK RRSEKRNWFCSVECGTVFSGLQGLVGKPISVGEDDLTWTLLRLSEEESSETRTKLSSAIDVLHECFKPFKDNFSGTDIVEDLTFSKRSDLQRLNFQRFYT IVIQRRGEVMSSANVRLLGKMLAEMPLIGTRFQYRGQGLCRVLLNELEKQLKKFGVEKLLLPAAHSVLDMWRDTFGFSELGSEDRKLVGCRFMEIEGTVT CQKLIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58610			PHD finger transcription facto...		Lus10018681 [exp]	0	1
AT4G35980			unknown protein		Lus10042598 [exp]	1.0	0.8859
AT3G16970			Plant self-incompatibility pro...		Lus10030565 [exp]	5.3	0.8323
AT3G47570			Leucine-rich repeat protein ki...		Lus10017400 [exp]	8.0	0.8524
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007564 [exp]	12.2	0.8759
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	12.5	0.8506
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020083 [exp]	19.4	0.8510
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036818 [exp]	20.4	0.8551
AT3G14470			NB-ARC domain-containing disea...		Lus10022900 [exp]	23.0	0.8060
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10018758 [exp]	24.7	0.8277
					Lus10032670 [exp]	30.3	0.8471

Compare expression of checked genes

Lus10018681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.