Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43190 203 / 5e-63 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G15710 62 / 1e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G33160 53 / 1e-07 F-box family protein (.1) AT1G27340 47 / 1e-05 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007740 [exp] 424 / 5e-148 AT5G43190 292 / 2e-94 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10010610 [exp] 201 / 7e-63 AT5G43190 327 / 2e-110 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 59 / 8e-10 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 59 / 1e-09 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037030 [exp] 48 / 4e-06 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015775 [exp] 47 / 7e-06 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003029 [exp] 46 / 2e-05 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10007855 [exp] 45 / 5e-05 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G016200 [exp] 244 / 2e-79 AT5G43190 277 / 2e-90 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G118700 [exp] 242 / 2e-78 AT5G43190 352 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G112400 [exp] 61 / 3e-10 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 60 / 5e-10 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G093200 [exp] 46 / 1e-05 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.003G062000 [exp] 44 / 5e-05 AT1G27340 83 / 4e-17 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G160900 [exp] 44 / 7e-05 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.003G171300 [exp] 44 / 8e-05 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G166500 [exp] 44 / 8e-05 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.001G057100 [exp] 43 / 0.0001 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018682 pacid=23176197 polypeptide=Lus10018682 locus=Lus10018682.g ID=Lus10018682.BGIv1.0 annot-version=v1.0 ATGAGAGTGATTATGGGTAAATGTTATTTTTGGTGGAAAAGGAGCAAAGCAAAGTTACGGAGAAGATCTTCAACGGTGGGTCTCTTACAAAAATTGGATG TTTTACTATATCCTTCGTCGGCGGCGGCATCATCAAATCCGCTACCGACGAAGACGACATCCACCAGGGTTGTCAAATTACCCAACTACCCCTTCGCGAA TGATTCAATTACTCTGGTCCCGATCCGATCCGGTTACAAAATATTCACTCTCTGCCCCGGAACCTCAACATCCGTCTCTGTTTACGACTCCGCCAACCGG CAATGGCACCAATCTGAGGACGCCACTCCTAATATAAAGGCTAGTTACCACAGGAGGGAAGGAGTCATCGTGACGGTATTTCTACCCGGAGACCCTTATT CGATCGTTGGTTACGATCTCGAGGCTAGGAGATGGGACGTCCTCAACGGCGGAATCCCCAACGGGGATCAAATGGTATTCACGAGGTTGGTGAGCGACGG CAAGAAGAAGATGTACTTGATCGGAGGGATCGCAACGTATTGGATATGGAGCGGGGTCAAAGTGTGGGAGCTTGACAGAGAAAGGAATTGGGTGGGAATT GGAAGCTTGCCGGAGGAGATTTGCCGGAAATTTGTCGGAGTTTGTTACCATAAATACGCGCATGTTTACTGTATGTGGCACAGGGGAATGATTTGTTTAT GTTGTTATACGTGTCCGGAGATACTCTACTACGACGTGGCGGCGAGGGAATGGGGATGGTTGCCGAAATGTCCTCTCTTGCCGGAGAAAGGGAGCTGTGG CTTCACATGGTTCTCTGCTGTCCCCCAGCTCTACACTTTGGTTTGA
AA sequence Show only first row Show all	>Lus10018682 pacid=23176197 polypeptide=Lus10018682 locus=Lus10018682.g ID=Lus10018682.BGIv1.0 annot-version=v1.0 MRVIMGKCYFWWKRSKAKLRRRSSTVGLLQKLDVLLYPSSAAASSNPLPTKTTSTRVVKLPNYPFANDSITLVPIRSGYKIFTLCPGTSTSVSVYDSANR QWHQSEDATPNIKASYHRREGVIVTVFLPGDPYSIVGYDLEARRWDVLNGGIPNGDQMVFTRLVSDGKKKMYLIGGIATYWIWSGVKVWELDRERNWVGI GSLPEEICRKFVGVCYHKYAHVYCMWHRGMICLCCYTCPEILYYDVAAREWGWLPKCPLLPEKGSCGFTWFSAVPQLYTLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43190			Galactose oxidase/kelch repeat...		Lus10018682 [exp]	0	1
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Lus10020072 [exp]	268.6	0.4196

Compare expression of checked genes

Lus10018682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.