Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67500 309 / 4e-106 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) AT5G15090 215 / 3e-69 VDAC3, ATVDAC3 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 3, voltage dependent anion channel 3 (.1.2) AT3G01280 209 / 1e-66 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) AT3G49920 196 / 2e-62 VDAC5, ATVDAC5 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 5, voltage dependent anion channel 5 (.1.2) AT5G57490 185 / 3e-57 VDAC4, ATVDAC4 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007739 [exp] 550 / 0 AT5G67500 317 / 5e-109 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10019284 [exp] 283 / 1e-95 AT5G67500 362 / 9e-127 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10011539 [exp] 262 / 3e-87 AT5G67500 340 / 4e-118 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10013271 [exp] 223 / 5e-72 AT3G01280 400 / 3e-142 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10015357 [exp] 209 / 1e-66 AT3G01280 385 / 5e-136 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10030794 [exp] 209 / 3e-66 AT3G01280 379 / 3e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10007267 [exp] 206 / 2e-65 AT3G01280 379 / 1e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10037212 [exp] 166 / 1e-49 AT3G01280 286 / 1e-96 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10036716 [exp] 138 / 2e-38 AT3G01280 265 / 6e-88 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G016300 [exp] 365 / 6e-128 AT5G67500 344 / 5e-120 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.005G146800 [exp] 320 / 3e-110 AT5G67500 416 / 2e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.007G055800 [exp] 310 / 2e-106 AT5G67500 405 / 7e-144 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.008G194900 [exp] 239 / 2e-78 AT3G01280 418 / 5e-149 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.010G033500 [exp] 230 / 7e-75 AT3G01280 390 / 5e-138 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.017G078200 [exp] 229 / 2e-74 AT3G01280 414 / 9e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.006G169400 [exp] 217 / 7e-70 AT5G57490 394 / 1e-139 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.018G093900 [exp] 204 / 1e-64 AT5G57490 387 / 9e-137 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.001G294100 [exp] 189 / 2e-58 AT5G67500 225 / 3e-72 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.001G294000 [exp] 186 / 9e-58 AT5G67500 203 / 4e-64 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [flax] [poplar] MBB PF01459 [flax] [poplar] Porin_3 Eukaryotic porin
Representative CDS sequence Show only first row Show all	>Lus10018683 pacid=23176188 polypeptide=Lus10018683 locus=Lus10018683.g ID=Lus10018683.BGIv1.0 annot-version=v1.0 ATGACCTCCTCCGTTAGTGGACCCGGTCTCTTTTCCGACTTCGGCAAGAAGGCTACAGATTTGCTTACCAGGGACTATCTCTCTCACCAGAAGTTCTCAA TCTCTACTCTTACTGCTTCCGGTGTGGCTCTTTCCTCAAACGTTGTTGAGAAAGGAGGTCTTTCTTCTGGAGAGATGGTAGCTCAATACAAACGGGAGAG GGCTACTGTTGACTTCAAAATTGACACCGAGTCCAATGTGACATCAACTATTAGCTCTACTGATTTCCCATTTTCATCTACCAAATTCATTGCTTCAACA AAATCATTTGACGATGACTGGTGGAAGTCGGAAGTCCAGTATTTCCATCATCATGCTGCCGTCACTGTTGGTTTTAACCTGAATAAGTCTCCAGCAGTTA ATTTCTCTGCAACTGTCGGTACTCCTGGCATTGCATTTGGTGCCGAGGCTAGCTACCTGACTTCCACAGGAGACTTTTGCAAGTACAATGCCGGTGTCAA CCTGACGAAACCAGATTTCATTGTCTCAGCGATTCTAGCTGACAAAGGAGACTCTATCAGAGTATCCTACTTGCATCATCTGGAAGAGCTGAATGGGGGT TCTATGGTGGCAGAGATCAGAAGGAAGTTCTCTACTAACGATAACACTTTAACCGTCGGATGCTCGTATGTGGTTGACCGTCATACATTATGGAAAGCAA AGCTAAACAACCATGGAAATCTAGCGGCACTTTTTCAGCACGAGATCACGCCCAAGTCCTTACTGACCGTATCTGGTGCATTCGACACCAAAGCTTTACA GAAGACTCCCAAATTTGGCATCGGCCTCTCCCTGAAGCCTTGA
AA sequence Show only first row Show all	>Lus10018683 pacid=23176188 polypeptide=Lus10018683 locus=Lus10018683.g ID=Lus10018683.BGIv1.0 annot-version=v1.0 MTSSVSGPGLFSDFGKKATDLLTRDYLSHQKFSISTLTASGVALSSNVVEKGGLSSGEMVAQYKRERATVDFKIDTESNVTSTISSTDFPFSSTKFIAST KSFDDDWWKSEVQYFHHHAAVTVGFNLNKSPAVNFSATVGTPGIAFGAEASYLTSTGDFCKYNAGVNLTKPDFIVSAILADKGDSIRVSYLHHLEELNGG SMVAEIRRKFSTNDNTLTVGCSYVVDRHTLWKAKLNNHGNLAALFQHEITPKSLLTVSGAFDTKALQKTPKFGIGLSLKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10018683 [exp]	0	1
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10017214 [exp]	4.9	0.8630
AT5G59240			Ribosomal protein S8e family p...		Lus10025887 [exp]	6.9	0.8565
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10024913 [exp]	8.8	0.8116
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10039360 [exp]	9.5	0.8518
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10020612 [exp]	9.6	0.8476
AT1G09590			Translation protein SH3-like f...		Lus10021079 [exp]	10.7	0.8401
AT5G52950			unknown protein		Lus10039318 [exp]	11.0	0.7934
AT2G21580			Ribosomal protein S25 family p...		Lus10034277 [exp]	11.5	0.8369
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Lus10001388 [exp]	12.7	0.7919
AT5G13830			FtsJ-like methyltransferase fa...		Lus10040283 [exp]	14.5	0.7706

Compare expression of checked genes

Lus10018683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.