Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01400 357 / 3e-124 ARM repeat superfamily protein (.1) AT5G58680 321 / 4e-110 ARM repeat superfamily protein (.1) AT2G23140 163 / 1e-45 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G46510 160 / 5e-45 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT4G16490 154 / 8e-44 ARM repeat superfamily protein (.1) AT2G28830 151 / 1e-41 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 148 / 7e-41 PUB15 Plant U-Box 15 (.1) AT1G23030 145 / 7e-40 PUB11 ARM repeat superfamily protein (.1) AT1G71020 140 / 1e-38 ARM repeat superfamily protein (.1.2) AT5G67340 140 / 5e-38 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007738 [exp] 414 / 7e-147 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10039047 [exp] 176 / 2e-52 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10016016 [exp] 160 / 3e-45 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10016565 [exp] 158 / 3e-44 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10011514 [exp] 158 / 6e-44 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 157 / 1e-43 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10012260 [exp] 156 / 2e-43 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10040834 [exp] 155 / 3e-43 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10022919 [exp] 153 / 4e-42 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G118800 [exp] 342 / 3e-118 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1) Potri.014G016400 [exp] 335 / 2e-115 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 163 / 3e-46 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 161 / 2e-45 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.007G051000 [exp] 159 / 2e-44 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G037700 [exp] 159 / 3e-44 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G144700 [exp] 158 / 5e-44 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G225400 [exp] 156 / 2e-43 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G009900 [exp] 152 / 2e-42 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.009G165900 [exp] 152 / 3e-42 AT5G42340 671 / 0.0 Plant U-Box 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10018684 pacid=23176234 polypeptide=Lus10018684 locus=Lus10018684.g ID=Lus10018684.BGIv1.0 annot-version=v1.0 ATGGGGACGGAGAATTCGGCATCCAGTTTCACTTACATGGGGAGGAGTTACGGCGACATCTCCGTCGTCACTGACCATTCCTCCGCTTTCAGCGACTGTA ACAGCGACAGATCTGGCGAATTCCCAACTGGCTCATCCGAGAGCCGCCGCCTCTTAGTCTCTTGCGCCGCTGACAATTCCGACGACCTCATGCTCCAGCT CGTCTCCAGTCTCGACTCCTGTTCCATTGACGAGCAGAAGCAGGCCGCCATGGAAATCAGGCTTCTCGCCAAGAACAAGCCAGAGAACCGACTCAAGATT GCTAAAGCAGGAGCAATCAGGCCCCTGATTTCCCTAATTTCCTCCAACGATTCTCAGCTCCAGGAGTACGGCGTCACCGCGATTCTCAATTTGTCCCTCT GCGACGAGAACAAAGAGGCGCTGGCTTCTTCGGGCGCGATTAAGCCTCTGATTAGAGCTCTCAAGTCCGGAACGGCCACAGCTAAGGAGAACGCCGCCTG CGCTCTGCTCCGGCTGTCGCAGGTGGAAGAGAATAAAGTCGCCATCGGAAGGTCGGGGGCGATTCCGCCGCTGGTGAGCTTACTAGAGAGCGGCGGAATC CGGGGGAAGAAAGACGCGTCAACCGCGCTCTACTCGTTGTGCTCCGTGATGGAGAACAAGATGAGAGCGGTTGACGGAGAACAAGATGAGAGCGGTTCAA GCCGGGATCATGAAGCCGCTGGTGGAATTGATGGCGGATTTCGGGTCAAACATGGTGGATAA
AA sequence Show only first row Show all	>Lus10018684 pacid=23176234 polypeptide=Lus10018684 locus=Lus10018684.g ID=Lus10018684.BGIv1.0 annot-version=v1.0 MGTENSASSFTYMGRSYGDISVVTDHSSAFSDCNSDRSGEFPTGSSESRRLLVSCAADNSDDLMLQLVSSLDSCSIDEQKQAAMEIRLLAKNKPENRLKI AKAGAIRPLISLISSNDSQLQEYGVTAILNLSLCDENKEALASSGAIKPLIRALKSGTATAKENAACALLRLSQVEENKVAIGRSGAIPPLVSLLESGGI RGKKDASTALYSLCSVMENKMRAVDGEQDESGSSRDHEAAGGIDGGFRVKHGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01400			ARM repeat superfamily protein...		Lus10018684 [exp]	0	1
AT3G01400			ARM repeat superfamily protein...		Lus10018685 [exp]	5.7	0.8323
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10022795 [exp]	8.0	0.8054
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10008113 [exp]	10.1	0.8552
AT3G01400			ARM repeat superfamily protein...		Lus10007738 [exp]	10.6	0.8483
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10010727 [exp]	13.0	0.8522
AT5G58070		ATTIL	temperature-induced lipocalin ...		Lus10036298 [exp]	13.9	0.8244
AT1G07160			Protein phosphatase 2C family ...		Lus10042275 [exp]	16.8	0.8501
AT3G03280			unknown protein		Lus10013490 [exp]	21.4	0.8466
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10043369 [exp]	22.8	0.8270
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10013151 [exp]	23.6	0.8450

Compare expression of checked genes

Lus10018684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.