Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03990 432 / 9e-155 alpha/beta-Hydrolases superfamily protein (.1) AT4G37470 291 / 2e-99 alpha/beta-Hydrolases superfamily protein (.1) AT3G24420 221 / 1e-71 alpha/beta-Hydrolases superfamily protein (.1) AT5G19850 49 / 1e-06 alpha/beta-Hydrolases superfamily protein (.1) AT4G24160 42 / 0.0004 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037651 [exp] 296 / 6e-101 AT4G37470 414 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10014859 [exp] 296 / 6e-101 AT4G37470 442 / 5e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10019303 [exp] 295 / 9e-101 AT4G37470 433 / 4e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10007737 [exp] 256 / 1e-84 AT3G03990 227 / 2e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10010398 [exp] 239 / 1e-78 AT4G37470 335 / 1e-116 alpha/beta-Hydrolases superfamily protein (.1) Lus10033087 [exp] 220 / 5e-71 AT3G24420 281 / 3e-95 alpha/beta-Hydrolases superfamily protein (.1) Lus10013541 [exp] 216 / 8e-70 AT3G03990 234 / 7e-77 alpha/beta-Hydrolases superfamily protein (.1) Lus10017296 [exp] 214 / 6e-69 AT3G03990 232 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) Lus10017735 [exp] 214 / 1e-68 AT3G24420 290 / 2e-98 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G118900 [exp] 434 / 2e-155 AT3G03990 440 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G016500 [exp] 423 / 3e-151 AT3G03990 434 / 1e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G052000 [exp] 305 / 2e-104 AT4G37470 451 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G145000 [exp] 304 / 2e-104 AT4G37470 468 / 7e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G062700 [exp] 246 / 1e-81 AT3G24420 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G155500 [exp] 240 / 5e-79 AT3G24420 331 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G235200 [exp] 42 / 0.0002 AT4G24160 645 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G219700 [exp] 42 / 0.0003 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 41 / 0.0007 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 40 / 0.0008 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10018686 pacid=23176198 polypeptide=Lus10018686 locus=Lus10018686.g ID=Lus10018686.BGIv1.0 annot-version=v1.0 ATGGTCACCGGTAAACGCCTGCTGGAGGCGCTGAACGTACGGCGCCTGGGGTCCGGGGACCGGATCCTGGTGTTCGCGCATGGCGTCGGAACCGACCAGT CAGCGTGGCAGCGTATTCTCCCCTTCTTCACCCAGAGCTACACCGTCATCCTTTACGACCTCGTCTGCGCTGGAAGCGTCAACCCGGACTACTTCGACTT CAACTGCTACACCACTCTCGACCCTTACGTCGACGACCTCCTCAACATCCTAGACGCCCACCGCGTCCACCGCTGCGCCTACGTCGGCCACTCCGTCTCC GCCATGATCGGCCTTCTCGCTTCCATCCGCCGCCCCGAGCTCTTCTCCAAGCTCATCCTCATCGGCGCCTCCCCCAGGTTTCTGAACGATAAGGATTACC ATGGGGGATTCGAGGAGAGGGAGATAGAGGAAGTGTTCTCGGCAATGGAGGCCAACTATGAGGCGTGGGTGCAAGGGTTTGCGCCGTTGGCTGTGGGAGC TGACGTGCCGGCGGCGGTGAGAGAATTCAGCCGGACGCTGTTCAACATGAGGCCGGACATCACTCTCTTTGTCTCCAGGACGGTCTTCAACAGCGACTTC AGGGGAATTTTGGGACTGGTCAAAGTTCCTTGCTGCATCATCCAGACCTCCAAGGACATGTCCGTACCTCCATCCGTTGCGGACTACATGAAGACCCACT TGGGCGGCCGGACCACCGTCGAGATTCTCATGACGGAAGGCCATTTGCCTCACTTGAGCGCTCCTGGCCTCCTTGCCCAGGTTCTCAGGCGAGCTCTAGC CCGATGA
AA sequence Show only first row Show all	>Lus10018686 pacid=23176198 polypeptide=Lus10018686 locus=Lus10018686.g ID=Lus10018686.BGIv1.0 annot-version=v1.0 MVTGKRLLEALNVRRLGSGDRILVFAHGVGTDQSAWQRILPFFTQSYTVILYDLVCAGSVNPDYFDFNCYTTLDPYVDDLLNILDAHRVHRCAYVGHSVS AMIGLLASIRRPELFSKLILIGASPRFLNDKDYHGGFEEREIEEVFSAMEANYEAWVQGFAPLAVGADVPAAVREFSRTLFNMRPDITLFVSRTVFNSDF RGILGLVKVPCCIIQTSKDMSVPPSVADYMKTHLGGRTTVEILMTEGHLPHLSAPGLLAQVLRRALAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10018686 [exp]	0	1
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10007737 [exp]	1.4	0.8783
AT1G62760			Plant invertase/pectin methyle...		Lus10024595 [exp]	3.5	0.8472
AT1G05675			UDP-Glycosyltransferase superf...		Lus10039041 [exp]	14.7	0.8221
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10014324 [exp]	16.0	0.8450
AT1G16760			Protein kinase protein with ad...		Lus10042205 [exp]	17.5	0.8436
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Lus10004028 [exp]	18.8	0.8387
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10024661 [exp]	21.0	0.8290
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10018084 [exp]	21.1	0.8648
AT4G21620			glycine-rich protein (.1.2)		Lus10011230 [exp]	22.8	0.8453
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10013079 [exp]	31.7	0.8382

Compare expression of checked genes

Lus10018686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.