Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27770 1639 / 0 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT4G37640 1595 / 0 ACA2 calcium ATPase 2 (.1) AT2G22950 1576 / 0 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT3G57330 1237 / 0 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT2G41560 1223 / 0 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT4G29900 924 / 0 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT5G57110 899 / 0 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT3G21180 886 / 0 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT3G63380 785 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G22910 741 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007736 [exp] 1753 / 0 AT1G27770 1528 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10011522 [exp] 1533 / 0 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10019300 [exp] 1456 / 0 AT4G37640 1628 / 0.0 calcium ATPase 2 (.1) Lus10025199 [exp] 1434 / 0 AT4G37640 1591 / 0.0 calcium ATPase 2 (.1) Lus10016366 [exp] 1256 / 0 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10035439 [exp] 1236 / 0 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10042040 [exp] 1224 / 0 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10031053 [exp] 1196 / 0 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10001638 [exp] 919 / 0 AT4G29900 1599 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G016600 [exp] 1714 / 0 AT1G27770 1686 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Potri.007G055500 [exp] 1590 / 0 AT4G37640 1721 / 0.0 calcium ATPase 2 (.1) Potri.001G020600 [exp] 1236 / 0 AT2G41560 1455 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.016G043100 [exp] 1233 / 0 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.006G046500 [exp] 1224 / 0 AT3G57330 1451 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Potri.003G204000 [exp] 1214 / 0 AT2G41560 1398 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.018G139800 [exp] 928 / 0 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.006G072900 [exp] 922 / 0 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.010G250800 [exp] 885 / 0 AT3G21180 1575 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.008G008100 [exp] 875 / 0 AT3G21180 1562 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00689 [flax] [poplar] Cation_ATPase_C Cation transporting ATPase, C-terminus PF12515 [flax] [poplar] CaATP_NAI Ca2+-ATPase N terminal autoinhibitory domain CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10018687 pacid=23176283 polypeptide=Lus10018687 locus=Lus10018687.g ID=Lus10018687.BGIv1.0 annot-version=v1.0 ATGGAGAACTATTTGAACGATAGTTTTGGTGACGTGAAGGCGAAGAACTCATCTGAGGAAGCTTTACAGAGATGGAGGAAGCTGTGTTGGTTGGTTAAGA ATAAGAAGCGGCGCTTCCGTTTCACTGCTAATCTCTCCAAGCGCTTTGAGGCTGATGCCATTCGTCGATCCAATCAGGAGAAGCTGAGAGTTGCGGTTTT GGTTTCAAAAGCTGCACTTCAGTTCATTCAGGGTTTAAGCTTGTCAAGTGACTACATTGTACCCGAGGAGGTGAAAGCAGCAGGCTTTCAGATTTGTGCA GAAGAGCTGGGATCAATTGTTGAAGGCCATGAAGTGAAGAAATTGAAAACTCATGATGGGGTGGAAGGTATTGCTGCGAAGCTATCTTCGTCAATCACCA ATGGTATTCCAACATCCGATGAGTTACTTGATCGAAGGAAACGTGTTTATGGTGTTAACAAATTCACGGAGAGTCCCCCAAAGAGTTTTTGGTTCTTCGT TTGGGAAGCACTCCAAGATACGACACTTATGATACTTGGATTCTGCGCCATCGTATCGCTTCTTGTCGGGATTATAATGGAAGGTTGGCCAAAAGGTGCC CATGATGGATTAGGAATAGTTACTAGCATTCTTCTGGTTGTGTTTGTCACTGCCACTAGTGATTACAGGCAATCTCTGCAGTTCAGAGATTTGGATAAGG AGAAGAAAAAGATTGTTGTTCAGGTCACAAGAAATGGCCTGAGGCAAAAGCTTTCCATATATGACCTACTTCCTGGCGACATTGTTCATTTGTGTATTGG AGACCAAGTCCCGGCTGATGGACTTTTCCTATCTGGGTACTCATTGTTAATCAATGAATCCAGCTTAACTGGAGAGAGTGAACCAGTTAATGTCAATGTA TCCAACCCTTTTCTCCTTTCGGGAACCAAAGTTCAGGATGGCTCATGTAAGATGCTTGTGACTACTGTTGGCATGAGAACACAATGGGGTAAACTGATGG CTACTCTTAGTGAAGGAGGGGATGATGAGACCCCGCTGCAAGTCAAATTGAACGGAGTTGCTAACCTTATTGGGAAGATAGGCTTGTTTTTTGCTGTTGT GACATTTGCCGTCCTAGTCCAAGGCTTGTTTACTCGCAAAATCCAACAAGGTAGCCAATGGGTTTGGTCAGGAGATGATGCTATGGAAATGTTGGAATTC TTTGCTATTGCTGTTACAATCGTTGTGGTTGCAGTTCCTGAGGGGCTCCCTTTGGCTGTGACTTTGAGTCTTGCTTTTGCTATGAAGAAGATGATGAACG ATAAGGCCCTTGTTCGTAATCTTGCTGCATGTGAGACTATGGGGTCTGCCACTACTATCTGTAGTGATAAAACTGGAACACTAACAACTAACCACATGAC TGTTGTGAAAACTTGCATATGTGGGGAGATTAAGGAAGTGAAGGATAGCTCTGAGAAGTTTGGATCCTCGATTCCGGAATCGGTTAGGGAAATTCTAATT GAATCAATTTTTAACAACACTGGAGGAGATGTGGTGGTGAATGCAGCCAAAAAAGTTGAGATTTTGGGTACTCCCACAGAAACTGCCCTTCTTGAGTTGG GCCTCAATCTTGGTAGAGATTTCAGGGAAGTAAGAGAAAGCTCCAAGATTGTTAAGGTTGAGCCTTTCAACTCTACAAAGAAGAGGATGGGAGTAGTTCT AGAGCTTCCTGGAGGAGGTTTCCGAGCTCACTGTAAGGGTGCCTCTGAAATAGCCTTAGCTGCTTGTGACAAATTTGTCAACTCAAATGGTGATGTCGTT CCACTTGATGGGGACTCAATGAAACATCTCCAAGACACGATCGAAAGTTTTGCAAATGAAGCTCTTCGAACTCTTTGCCTCGCATACTCAGATATGGGAA GTGAATACTCTCCTGGCAGTGATGATATCCCTTTCCGCGGATACACTTGCATTGCTATTGTTGGTATCAAAGATCCAGTCCGCCCTGGTGTCAAGGAATC TGTGGCGGTCTGCAGATCTGCCGGGATCATTGTTCGTATGATCACTGGAGATAACTTAACAACTGCTAAGGCTATTGCTAGAGAATGTGGAATTCTTACT GATGATGGAATAGCAATTGAAGGTCCTGAATTCAGGGAGAAGACTGAGGAGGAGTTGCAACAACTTATTCCCAAACTCCAGGTGATGGCGAGATCTTCAC CTATGGATAAGCATACTCTTGTCAAGCAACTACGAACTACTTTCCAAGAGGTTGTTGCTGTGACTGGTGACGGTACAAATGATGCTCCAGCACTTCATGA GGCAGATATCGGGCTTGCAATGGGCATTGCAGGAACTGAGGTGGCAAAAGAGAGTGCTGATGTTATCATTCTAGATGATAACTTCTCAACAATCGTGACA GTGGGAAAATGGGGACGTTCAGTTTATGTCAACATACAAAAGTTCGTTCAGTTCCAGTTGACTGTGAATATAGTTGCCTTAATTGTCAACTTCTCTTCAG CTTGTTTGACAGGAAATCCTCCATTAACTGCAGTACAGCTTCTGTGGGTGAATATGATCATGGATACACTTGGCGCATTGGCCTTAGCCACGGAGCCACC AACTGATGATCTGATGAAGAGAGCTCCGGTTGGCAGGAAAGGGAACTTCATTAGTAACATAATGTGGAGGAATATCTTGGGACAATCTTTGTATCAGTTT GTGGTGATGTGGTACCTTCAGACAAGAGGAAAAGCAGCATTCCAGCTTGATGGCCGCCAAGATTCTGATTTGATACTCAACACTCTCATCTTTAACTCGT TTGTCTTCTGCCAGGTATTCAACGAGATAAGTTCCAGGGAGATGGAGAAAGTCAATGTCTTTGATGGCATACTGAAGAACTACGTGTTTGTAGCTGTATT GGGGTCCACAGCCATCTTCCAGATCATAATCGTGGAGTTTCTAGGCACATTTGCCAGCACAACTCCTCTTACTTGGCAGCAGTGGTATGTAAGCATAGTC GTTGGGTTCCTTGGCATGCCAATTGCTGCTATTCTGAAGATGATTCCAGTAGGATCAAGCTGA
AA sequence Show only first row Show all	>Lus10018687 pacid=23176283 polypeptide=Lus10018687 locus=Lus10018687.g ID=Lus10018687.BGIv1.0 annot-version=v1.0 MENYLNDSFGDVKAKNSSEEALQRWRKLCWLVKNKKRRFRFTANLSKRFEADAIRRSNQEKLRVAVLVSKAALQFIQGLSLSSDYIVPEEVKAAGFQICA EELGSIVEGHEVKKLKTHDGVEGIAAKLSSSITNGIPTSDELLDRRKRVYGVNKFTESPPKSFWFFVWEALQDTTLMILGFCAIVSLLVGIIMEGWPKGA HDGLGIVTSILLVVFVTATSDYRQSLQFRDLDKEKKKIVVQVTRNGLRQKLSIYDLLPGDIVHLCIGDQVPADGLFLSGYSLLINESSLTGESEPVNVNV SNPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVANLIGKIGLFFAVVTFAVLVQGLFTRKIQQGSQWVWSGDDAMEMLEF FAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNHMTVVKTCICGEIKEVKDSSEKFGSSIPESVREILI ESIFNNTGGDVVVNAAKKVEILGTPTETALLELGLNLGRDFREVRESSKIVKVEPFNSTKKRMGVVLELPGGGFRAHCKGASEIALAACDKFVNSNGDVV PLDGDSMKHLQDTIESFANEALRTLCLAYSDMGSEYSPGSDDIPFRGYTCIAIVGIKDPVRPGVKESVAVCRSAGIIVRMITGDNLTTAKAIARECGILT DDGIAIEGPEFREKTEEELQQLIPKLQVMARSSPMDKHTLVKQLRTTFQEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVT VGKWGRSVYVNIQKFVQFQLTVNIVALIVNFSSACLTGNPPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRAPVGRKGNFISNIMWRNILGQSLYQF VVMWYLQTRGKAAFQLDGRQDSDLILNTLIFNSFVFCQVFNEISSREMEKVNVFDGILKNYVFVAVLGSTAIFQIIIVEFLGTFASTTPLTWQQWYVSIV VGFLGMPIAAILKMIPVGSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Lus10018687 [exp]	0	1
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10011243 [exp]	1.0	0.8289
AT5G66900			Disease resistance protein (CC...		Lus10022464 [exp]	3.9	0.8014
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10040620 [exp]	4.9	0.8265
AT1G54730			Major facilitator superfamily ...		Lus10029962 [exp]	10.6	0.7011
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10035419 [exp]	14.6	0.7801
AT4G28290			unknown protein		Lus10018592 [exp]	19.6	0.7458
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Lus10028143 [exp]	20.4	0.7600
AT3G30390			Transmembrane amino acid trans...		Lus10007716 [exp]	23.2	0.7202
AT3G23160			Protein of unknown function (D...		Lus10021210 [exp]	27.8	0.6523
AT5G36930			Disease resistance protein (TI...		Lus10013729 [exp]	30.2	0.7522

Compare expression of checked genes

Lus10018687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.