Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37630 97 / 6e-23 CYCD5;1 cyclin d5;1 (.1.2) AT5G65420 89 / 7e-20 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT2G22490 85 / 4e-18 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT1G70210 84 / 4e-18 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G10440 82 / 2e-17 CYCD4;2 cyclin d4;2 (.1) AT3G50070 72 / 9e-14 CYCD3;3 CYCLIN D3;3 (.1) AT4G34160 69 / 1e-12 CYCD3;1 CYCLIN D3;1 (.1) AT5G67260 67 / 3e-12 CYCD3;2 CYCLIN D3;2 (.1) AT4G03270 57 / 5e-09 CYCD6;1 Cyclin D6;1 (.1) AT5G02110 50 / 1e-06 CYCD7;1 CYCLIN D7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007735 [exp] 542 / 0 AT4G37630 103 / 3e-25 cyclin d5;1 (.1.2) Lus10029194 [exp] 89 / 6e-20 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 84 / 6e-18 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10024796 [exp] 78 / 8e-16 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1) Lus10018739 [exp] 74 / 2e-14 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10019825 [exp] 72 / 7e-14 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10011507 [exp] 69 / 6e-13 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10019317 [exp] 69 / 9e-13 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10014089 [exp] 69 / 1e-12 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G119000 [exp] 153 / 8e-44 AT4G37630 119 / 4e-31 cyclin d5;1 (.1.2) Potri.014G016700 [exp] 151 / 5e-43 AT4G37630 142 / 7e-40 cyclin d5;1 (.1.2) Potri.007G055300 [exp] 145 / 2e-40 AT4G37630 198 / 3e-61 cyclin d5;1 (.1.2) Potri.008G146600 [exp] 88 / 2e-19 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.002G103500 [exp] 88 / 2e-19 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.001G292300 [exp] 88 / 3e-19 AT2G22490 178 / 1e-52 Cyclin D2;1 (.1.2) Potri.010G095200 [exp] 82 / 2e-17 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.005G157800 [exp] 82 / 2e-17 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.009G086700 [exp] 82 / 4e-17 AT1G70210 168 / 3e-49 CYCLIN D1;1 (.1) Potri.002G123000 [exp] 78 / 7e-16 AT4G34160 280 / 1e-91 CYCLIN D3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018688 pacid=23176172 polypeptide=Lus10018688 locus=Lus10018688.g ID=Lus10018688.BGIv1.0 annot-version=v1.0 ATGGCCGACAATGTCAATCTTCTCTGTAACGAGGACATCTTCGACGCCGCATCCCCCCCTGCCGCTCCTCCGCCTTCAGGAGAGCCACTTGACGGTGATG ATGATGATTTGTTTAGAGAAATATGTTTCAAGTATAAGAGTCAAATCGGAGGAGACCAAGAGGAGGAGTTCGTTAGATACTTGGTTGAAAAGGACTTTGC CCATGGATTCAGAATATCAGGTGGTGGTCAAAGCGTTGATTTTGATGAATGGGTCAGACGCCCTCGTATCAAAGCCATCGATTGGATTCTCAATACTAGA ACTTCACTCGGGCTCCGCTGGAAAACGGCGCATCTTTCTGTCTGTTACATGGATCGCTTTTTGACGATTTTCTACATTGAGGTGTTAGGACAGCGGCAGT GGCTATGGGCAGTGAGGCTTCTGCAGATGGCGTGTTTATCATTGGCAGCCAAATTGGAAGAGACTGATGCTGCAACGCATTCTTTGGTTTCGTATCAAGA CGGGAGTATCAATTTCGGATGCGAAGGAATTAGGAGAATGGAGATTCATGTTATGAACAACTTGAAATACCGATTGAACACTTCCACTCCTTTTGACTAT ATCCCCTGTTTCATCGTCAAGGCGGTCGAGACTCGCCCATCCAGAGAAATGGTCTCGAGGATTGCCAATTTGGTATTTGCGTTTACAAAAGAAGTGAACT TGACAAACCACAGGCCGGCATCAATAGCAATTGCTGCAATCATGGCTGGAATGGATCAGAAATTGGAAGAAGCAGCAGTTGTTGCTCGAATGGATACATT CGTTTATGCTCATTTACTCGATGTTGGGAATGTGGTTGAATGTTACAGTCTGATGAAGATTATAAATTTGGAGGATAGAGGAGAAAATTCGGTGATAACT TCTCCTGATGCGTCACCTGGAAGATACGATGATTTTGACGGGGAAGGAAGTTTCTCGGTGTCTTTTGGTAACGCTAAGAGAAGGAGGCTTGATTTTGATA GGCCACCTGATCGTCGTCCACCGGATCTCTGA
AA sequence Show only first row Show all	>Lus10018688 pacid=23176172 polypeptide=Lus10018688 locus=Lus10018688.g ID=Lus10018688.BGIv1.0 annot-version=v1.0 MADNVNLLCNEDIFDAASPPAAPPPSGEPLDGDDDDLFREICFKYKSQIGGDQEEEFVRYLVEKDFAHGFRISGGGQSVDFDEWVRRPRIKAIDWILNTR TSLGLRWKTAHLSVCYMDRFLTIFYIEVLGQRQWLWAVRLLQMACLSLAAKLEETDAATHSLVSYQDGSINFGCEGIRRMEIHVMNNLKYRLNTSTPFDY IPCFIVKAVETRPSREMVSRIANLVFAFTKEVNLTNHRPASIAIAAIMAGMDQKLEEAAVVARMDTFVYAHLLDVGNVVECYSLMKIINLEDRGENSVIT SPDASPGRYDDFDGEGSFSVSFGNAKRRRLDFDRPPDRRPPDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Lus10018688 [exp]	0	1
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031823 [exp]	4.2	0.8803
AT3G52115		AtCOM1, ATGR1	gamma response gene 1 (.1)		Lus10015699 [exp]	7.3	0.8543
AT1G47740			PPPDE putative thiol peptidase...		Lus10032708 [exp]	8.9	0.8274
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10024838 [exp]	9.4	0.8752
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10027985 [exp]	9.5	0.8359
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10009653 [exp]	9.6	0.8598
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10015526 [exp]	11.6	0.8584
AT5G02430			Transducin/WD40 repeat-like su...		Lus10000387 [exp]	11.9	0.7649
AT5G52800			DNA primases (.1.2.3)		Lus10014953 [exp]	15.1	0.8601
AT3G13275			unknown protein		Lus10007090 [exp]	16.9	0.8278

Compare expression of checked genes

Lus10018688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.