Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27760 535 / 0 SAT32, ATSAT32 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007734 [exp] 746 / 0 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10025970 [exp] 82 / 8e-17 AT1G27760 113 / 3e-27 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G016800 [exp] 575 / 0 AT1G27760 563 / 0.0 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3) Potri.002G119100 [exp] 563 / 0 AT1G27760 539 / 0.0 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3) Potri.009G088700 [exp] 203 / 1e-60 AT1G27760 198 / 9e-59 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04836 [flax] [poplar] IFRD_C Interferon-related protein conserved region CL0020 [flax] [poplar] TPR PF05004 [flax] [poplar] IFRD Interferon-related developmental regulator (IFRD)
Representative CDS sequence Show only first row Show all	>Lus10018689 pacid=23176261 polypeptide=Lus10018689 locus=Lus10018689.g ID=Lus10018689.BGIv1.0 annot-version=v1.0 ATGTTGGACAGTGATGATGAGGATAATAGTAGCGTGAGTTCGTCGTCTACTGTTCGTTCAGATCGTATGTCTGTCAATGGGAATGAAGAGGTTGAGGTTG AGAAGGATAACTTGCTAGATCAGGCTTTGGATGCTTTGTACGAGAAGAGGAGTACAACAAGAGAAAAAGCGTTGGCTTCAATTATCGAGGCTTTCAATAC CAATTTGCAGCATGAGTTTGTGGAAAAGAAGTTTGCCACTTTGCTACATCAATGTATTAGCTGCATTAAGAAAGGGTCCAACACAGAGATAGCTCTTGCC TCTCATACCATTGGATTATTGTCATTAACGGTTGGTTCTGGTGATAATGCCCGTGAAATATTAGAAGAGTCGCTAGCTCCAATATCCCAGGCACTCAAGT CTGGAACAGACTCGTTGAGGAGGGTAGCATTGTTGGAGTGTCTTGCTATCATAACTTTTGTTGGTGGAGATGATCCTGAGCAAACAGAACAATCCATGCA GGTCATGTGGCAGTTGGTTCGGCCTAAGCTTGGCCCAAATGTTGTTGCTGTCAAACCGTCTAGTGCTGTAATTACAACAGTGGCGTCTGCTTGGGCATTT CTTTTGACATCCATGGACCAGAGGACACTAAGCCCCAAGGATTGGCAAGAGTCCATTTCATACTTCTCTACTCTCCTCGATAAGGAGGACCGAACTGTTC GCATTGCTGCTGGTGAAGCACTGGCTTTTATTTTTGAGACGGGATGCCTAGAAAAGTTTGCTGCTGAGGGTGTGGAAAGCTCAGTTCAAGATGGGGATAA ATCATATACACACCTACGAGGTCTAAAAGCGAAAATCTTAAATCAAGTGAGAGCCCTCGCAGCAGAGGCTGGAGGAAAAGGATCAGCGAAGAAAGACCTC AACAGCCAGCGGAACTTGTTTAAGGACATCCTGGAGTTCATTGAGGACGGTTACAGTCCCGAAGTCACAGTGAAGATAGGTGGAGATCCATTCCAGACGT CCACCTGGTATCAACTTATACAGCTTAACTTCTTGAAGCATTTTCTTGGTGGTGGCTTTGTCAAACACATGCAGGATAATGGATTCGTTCAAGATGTACT TGGATTCGCACCAAAGAAAAAGCTTCTTCAGGGTGCTGATTTGCAGCTATCAAGTGGTGATAAGAGAATGTTCCGGTCACCAAATTCGGCTATGAACAAA GCCAGAACTCAATACCTAAACAAGCAACGAATGCTGTCTGAGGGAAGAAATGCTGGCCACTATTCCTTGAATGCTGCGGACGAGTAG
AA sequence Show only first row Show all	>Lus10018689 pacid=23176261 polypeptide=Lus10018689 locus=Lus10018689.g ID=Lus10018689.BGIv1.0 annot-version=v1.0 MLDSDDEDNSSVSSSSTVRSDRMSVNGNEEVEVEKDNLLDQALDALYEKRSTTREKALASIIEAFNTNLQHEFVEKKFATLLHQCISCIKKGSNTEIALA SHTIGLLSLTVGSGDNAREILEESLAPISQALKSGTDSLRRVALLECLAIITFVGGDDPEQTEQSMQVMWQLVRPKLGPNVVAVKPSSAVITTVASAWAF LLTSMDQRTLSPKDWQESISYFSTLLDKEDRTVRIAAGEALAFIFETGCLEKFAAEGVESSVQDGDKSYTHLRGLKAKILNQVRALAAEAGGKGSAKKDL NSQRNLFKDILEFIEDGYSPEVTVKIGGDPFQTSTWYQLIQLNFLKHFLGGGFVKHMQDNGFVQDVLGFAPKKKLLQGADLQLSSGDKRMFRSPNSAMNK ARTQYLNKQRMLSEGRNAGHYSLNAADE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10018689 [exp]	0	1
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10025605 [exp]	3.0	0.7873
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10023440 [exp]	3.5	0.7592
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010801 [exp]	6.7	0.7213
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10030161 [exp]	7.5	0.7489
AT4G03260			Outer arm dynein light chain 1...		Lus10039729 [exp]	10.0	0.7184
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031768 [exp]	14.7	0.7353
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002604 [exp]	15.7	0.7065
AT5G06440			unknown protein		Lus10029362 [exp]	16.2	0.6833
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10037469 [exp]	18.3	0.7243
AT3G07700			Protein kinase superfamily pro...		Lus10006363 [exp]	19.0	0.7702

Compare expression of checked genes

Lus10018689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.