Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30950 502 / 6e-177 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT5G15710 109 / 5e-26 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27340 100 / 7e-23 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61590 91 / 7e-20 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G43190 53 / 2e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G33160 52 / 7e-07 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007755 [exp] 780 / 0 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10015775 [exp] 110 / 3e-26 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 110 / 3e-26 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037030 [exp] 110 / 4e-26 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 110 / 6e-26 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10010610 [exp] 91 / 9e-20 AT5G43190 327 / 2e-110 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003029 [exp] 88 / 1e-18 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10007855 [exp] 82 / 2e-16 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10003117 [exp] 49 / 5e-07 AT1G27340 165 / 7e-50 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G160900 [exp] 573 / 0 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.003G074100 [exp] 565 / 0 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.003G171300 [exp] 123 / 8e-31 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G057100 [exp] 115 / 8e-28 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G112400 [exp] 113 / 2e-27 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 107 / 4e-25 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G166500 [exp] 92 / 6e-20 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.014G093200 [exp] 87 / 2e-18 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.003G062000 [exp] 71 / 2e-13 AT1G27340 83 / 4e-17 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G217500 [exp] 57 / 1e-08 AT4G33160 419 / 9e-145 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10018690 pacid=23176286 polypeptide=Lus10018690 locus=Lus10018690.g ID=Lus10018690.BGIv1.0 annot-version=v1.0 ATGGAGGCTGCTTTCAACACCTCCTCCTCCTCGATCCCTCTGTCTTTCTCCTACACTTTCACCGCCGCCGCAGCCGCAATGGGTGCCCAGCTAACCACCA ACAACAACCCATGGATGGATACCAGGATCTGGAGCAAACTCCCCACTAAACTCCTCGACCGCGTCATCGCTTTCCTCCCCCCGCCGGCCTTCTTCCGTTC ACGCTGCGTCTGCAAGCGCTGGTACTCCCTTCTCTTCTCCACCTCCTTCCTCCATCTCTACATCCACCTCTCCCCTCCTCGCCACTGCTTCCTCTTTTTC AAACAAAAACCCACCCCCACCACCGCCGCCGCCTTCATCTACAACAACAACAACCTTAACAACAGCAACAACCTTAACAACAACAACAACTCCTCCCACC GTGAAGGCTACCTCTTCGATCCCTACGACCTCCTCTGGCACCGAATCTCATTCTCCCTCATTCCACCCGGATTCTCCCCCACCGCTTCCTCCGGCGGCTT AGTCTGCTGGATATCCGATGAAGCCGGACCCAAAACCCTCTTCCTCTCAAACCCTTTGACCAACTCCGTCTCTCAGCTCCCTCCAACACTCCGCCCACGT CTCTTCCCTTCCATCGGACTCTCCGTGGGACCCTCTTCCATCCACGTGGCAGTAGCCGGTGACGACCTAATCTCACCTTACGCGGTGAAGAACATCTCAA CAGAATCCTTCCACGTGGACGCAGCTGGTTTCTACTCGCTGTGGGGAACCACATCACAGCTCCCGAGGCTGTGTAGCCTGGAGACAGCTGGACAGATGGT GAGCGTCAGCCAAGGGAGGTACCTCTACTCCATGAACCACAGCCCCTTCAGCGTCCTGGGACACGACGTCGTTTCGAACTCGTGGTTCAAAATCCAGGCT CCCATGCGGCGGTTCCTCCGCTCGCCTTCGCTGGTGGAGAGCGGAGGGAGGGTTGTGCTGGTGGCGGCGGTGGAGAAGAGCAAGCTGAATGTTCCTAGGA GCCTGAGGATGTGGAGCCTGCAAGGCGCTGCTGGGACGTGGGTGGAGATAGAGAGGATGCCGCAGCAGCTGTACGTGCAGTTCACGGAGGTGGAAGGAGG GCGTGGGTTTGAGTGCGTGGGACATGGGGAGTTCGTTGTGATAATGATACGGAGGAGTGGGAATCGAGGGCTGTTGTTTGATATGTGGAGGAAGGTGTGG CAGTGGATTCCCTTGTGTCCTTACGTTGACCATCTTCAAGACTTGCGTGGGTTTGGTTATGACCCTCGCCTTGCTACCCCCGTTACCGGTCTGCTTGATC AGCTCACCCTTCCTAGTTTCACTTCCTTTAATTAA
AA sequence Show only first row Show all	>Lus10018690 pacid=23176286 polypeptide=Lus10018690 locus=Lus10018690.g ID=Lus10018690.BGIv1.0 annot-version=v1.0 MEAAFNTSSSSIPLSFSYTFTAAAAAMGAQLTTNNNPWMDTRIWSKLPTKLLDRVIAFLPPPAFFRSRCVCKRWYSLLFSTSFLHLYIHLSPPRHCFLFF KQKPTPTTAAAFIYNNNNLNNSNNLNNNNNSSHREGYLFDPYDLLWHRISFSLIPPGFSPTASSGGLVCWISDEAGPKTLFLSNPLTNSVSQLPPTLRPR LFPSIGLSVGPSSIHVAVAGDDLISPYAVKNISTESFHVDAAGFYSLWGTTSQLPRLCSLETAGQMVSVSQGRYLYSMNHSPFSVLGHDVVSNSWFKIQA PMRRFLRSPSLVESGGRVVLVAAVEKSKLNVPRSLRMWSLQGAAGTWVEIERMPQQLYVQFTEVEGGRGFECVGHGEFVVIMIRRSGNRGLLFDMWRKVW QWIPLCPYVDHLQDLRGFGYDPRLATPVTGLLDQLTLPSFTSFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Lus10018690 [exp]	0	1
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10022427 [exp]	6.1	0.9933
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10024533 [exp]	8.6	0.9923
					Lus10007546 [exp]	10.5	0.9923
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	12.2	0.9923
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	13.6	0.9923
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10026079 [exp]	14.7	0.9871
					Lus10011636 [exp]	14.9	0.9923
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	16.1	0.9923
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10011892 [exp]	17.2	0.9923
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10015952 [exp]	18.2	0.9923

Compare expression of checked genes

Lus10018690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.