Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27752 743 / 0 Ubiquitin system component Cue protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007753 [exp] 1501 / 0 AT1G27752 793 / 0.0 Ubiquitin system component Cue protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G016900 [exp] 892 / 0 AT1G27752 705 / 0.0 Ubiquitin system component Cue protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF02845 [flax] [poplar] CUE CUE domain
Representative CDS sequence Show only first row Show all	>Lus10018693 pacid=23176278 polypeptide=Lus10018693 locus=Lus10018693.g ID=Lus10018693.BGIv1.0 annot-version=v1.0 ATGTCGCGACGCTTCTCTTCCACCGGCGGAGACAGAAACCTCCAAGAGGGAGGCAGCAGCACTGCTACCACGGCCAACAACATCGGCCACAACCATCAGT ACAGCACTCAGAATTACGCTCCAAAATCGCAGAAGAAATTCGTTCCAAAGCAGCACAACCCTATCAACCCTACACTCTCCACTTCCCTTCGGAAATCCGA TGTTCCTTCTCCTCCTCCTCCTTCTTCGTCATCCAGCTCCCGTGCTGCGGGCGATTCCATCAGTAGGATCCGGATGGGTGACAGCGGAGAATGGGTTTCT AATAGAGCAATTGTTGGGACTACGACTACCGCTGTTGGAAAATTTGTCAACTATTTGCCCCAGGACGAGGGAGTAGCCACAGGGCTCGTGGCGGAGGAAG GCGGGCTTGATGCTGTGGAGTCCCAGAGGGTTGTTGATCTATTGAACAGAGAACTCTCCCGATTGCTTAAGCTGAGCCCCAGAGAGTTCTGGAAGGAAGT GGCCAAGGACGAATCGTTGCCTGAATTTCTGGATAGCTTCCTAAAGTTTAGGAGCAGATGGTATGATTTCCCATATCGTGGAGCCAAGGAAATTGTTGCT GGGGTCATTGTTGGAGATCTTGAGTTATCTCGACGTGTTTTCATGGTATTGTATCGCATGTCCTCTAATAGGGATCCTGGTGCTAGGTCTGCTGACAGTC TTAGCTCAAAAGACCATTCAGTCCTAATGCAGGAAAAGAAGTTGCTTGATTTGGCTAAGTTACTGGATATCTGTGGCATATATGGTCATGAGAATGAAGA ATTGACTCGAATCCTGGTGAGAAATGCTTTAAATTCCCAGCCTGGGATCCAAAATAATCTGACTGCCGTGATGTCACATTTCCTGGGCATTGTCCAAACA ATGTACCAACGCTGCATCTCATCTTTGGAGGTTTTGTTTTCATCTACAAGCCCTCAAGAGGTCCGGTCCAGTCAGCTTCGTGATGATTTCTTGGAGGTGA TGGACTTCATAAATGATGCAGTTGTCTCTATGGATACATTGGTTGTTATGTATAGACCAGCAGCCTTGTTCTTTTCATTGCCTGTGCAAATGAGTGATGG ATATGGTGAGTTGCTAGTCAGTCTTGCAAGATTGCATGATAGCCTCATCCCCTCTTTTCAGCGAGGGTTTAGGATGATGTTTTCTCAGCAAGGAGATGCT GGGATGATATCAAATGTCGCTATTAGCTTGAAGATGTTATCACTTAGAATTGCCTCATTTGGTTGGAAAATACTGGACTACTGCTATTTAAGCGAAGAAC TTGTTGAAGATATGTCAGCCATTCCAGAAGTAACGCAGATGTATCCTGCAAAACTCGAGGATCCAATGATAAGGGCGGAGATATTGGTTCAAACATTCCG GGAGATTAACGGGATCTCACTTTCTGTTCAGGAAAATCATCCTTATAGTACATTTCTAAAGAACATTGACCAGAACTTCCATATCATGGGCAAACTTGAC ATCTTGCAGAACACTGGATGGATATTCTTGGACGACGAGAACCTCCAATACTTATCTGGGATAATGATGTCTTCTCCCAAGAGCACTGTTAAAGATTTGC CACTTCTGCTACAATCTGGTCAGGAAAACAAAGTGTTGATGGATGAAGGCACAGCTTTCTTGGAGTCAAAGATCAGTCAGATAAAGGACCTCTTTCCTGA TTATGGTAAAGGGTTCTTAGCTGCCTGCCTTGAAGCTTATAACCAAAATCCTGAAGAAGTCATTCAGAGAATACTGGAAGGGACTCTTCATGAAGATCTA CAGCGCTTGGACATTTCGTTAGAGACGTTACCAGCGCCGAAGAACGGTCAAACTGTGAGCAGAAAAGATAAGGGTAAAGGGAAGTTAGATGAGAGCACGT CTCTTCCTCCAGTACAGCCCAGTCATTCTAGTAAACCGATGGGGGTTGAGCAAACAATTAAAGCCCCACCTGCTTCATCTTCGTCCACAGTAGGGAGGTT TGTTAGAAAGTCAGAAAACCTGGATAAAAACATTCTTGATAACAGAGATGACAAGGATATAGCAAGAAACTACGCACTTGCATTGCAGTTCGAGTATGAT GATGAATATGACGACTCCTTTGACGACCTGGGCGTGACCGTCGCGGAGACAGGACTAGAAGGAAATGAGACATTCAACGAAAGAATTAGGTCCGGTTCGA GCAATTCATCAGCTGCTGAAACAGCTAGCTCTGGTCGAGGCCCGTCAGACTCAAAGTGGGGGTCGAGGAAGCAGCCACAATTCTACGTGAAGGACGGTAA AAACTACAGTTACAAGGTACAAGGTTCGGTTGGAGTTGCAAATAAGGAAGAAGCTCAACTGATAACACAAGTACATGGAGAGCAAATACATGGTCTTGGA CGGGGTGGTAACATTCCCATGGGTGCAGCCAGGAAGTTGAGTGACTACCAAGAGCAGCAAGAAGAGCAGTCGAATGAACCTGAGATGGAGAGAAGAGAGA ACAACATCCGAGGGTTTCGGGGTAGAGGAATGAGAGGTGGCGGAATTGGAAGGTCCAAGGAGTCGTCCCGAGAAGAGAAGGATCAGCCATCTGATGGTTC GGAGATGGAAGGAACGGCGGGGAATCCAGGAAACATGAGAGGCAGAGGCAGAGGCAGGGGGCGAGGGAGGGGAGGGGCGGATAACCACCATAGGAAGGAT AGAGCAATACGTAAGCATATGGCTGGCTTCTCCGGATGA
AA sequence Show only first row Show all	>Lus10018693 pacid=23176278 polypeptide=Lus10018693 locus=Lus10018693.g ID=Lus10018693.BGIv1.0 annot-version=v1.0 MSRRFSSTGGDRNLQEGGSSTATTANNIGHNHQYSTQNYAPKSQKKFVPKQHNPINPTLSTSLRKSDVPSPPPPSSSSSSRAAGDSISRIRMGDSGEWVS NRAIVGTTTTAVGKFVNYLPQDEGVATGLVAEEGGLDAVESQRVVDLLNRELSRLLKLSPREFWKEVAKDESLPEFLDSFLKFRSRWYDFPYRGAKEIVA GVIVGDLELSRRVFMVLYRMSSNRDPGARSADSLSSKDHSVLMQEKKLLDLAKLLDICGIYGHENEELTRILVRNALNSQPGIQNNLTAVMSHFLGIVQT MYQRCISSLEVLFSSTSPQEVRSSQLRDDFLEVMDFINDAVVSMDTLVVMYRPAALFFSLPVQMSDGYGELLVSLARLHDSLIPSFQRGFRMMFSQQGDA GMISNVAISLKMLSLRIASFGWKILDYCYLSEELVEDMSAIPEVTQMYPAKLEDPMIRAEILVQTFREINGISLSVQENHPYSTFLKNIDQNFHIMGKLD ILQNTGWIFLDDENLQYLSGIMMSSPKSTVKDLPLLLQSGQENKVLMDEGTAFLESKISQIKDLFPDYGKGFLAACLEAYNQNPEEVIQRILEGTLHEDL QRLDISLETLPAPKNGQTVSRKDKGKGKLDESTSLPPVQPSHSSKPMGVEQTIKAPPASSSSTVGRFVRKSENLDKNILDNRDDKDIARNYALALQFEYD DEYDDSFDDLGVTVAETGLEGNETFNERIRSGSSNSSAAETASSGRGPSDSKWGSRKQPQFYVKDGKNYSYKVQGSVGVANKEEAQLITQVHGEQIHGLG RGGNIPMGAARKLSDYQEQQEEQSNEPEMERRENNIRGFRGRGMRGGGIGRSKESSREEKDQPSDGSEMEGTAGNPGNMRGRGRGRGRGRGGADNHHRKD RAIRKHMAGFSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27752			Ubiquitin system component Cue...		Lus10018693 [exp]	0	1
AT5G10370			helicase domain-containing pro...		Lus10023162 [exp]	11.0	0.6988
AT2G02370			SNARE associated Golgi protein...		Lus10012163 [exp]	14.3	0.6700
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10039977 [exp]	46.6	0.6805
AT4G26180			Mitochondrial substrate carrie...		Lus10008572 [exp]	80.6	0.6744
AT5G24740			Protein of unknown function (D...		Lus10003834 [exp]	135.6	0.6593
AT1G03910			unknown protein		Lus10027731 [exp]	149.9	0.6136
AT4G03000			RING/U-box superfamily protein...		Lus10041246 [exp]	165.3	0.6266
AT4G23460			Adaptin family protein (.1)		Lus10017508 [exp]	186.4	0.6203

Compare expression of checked genes

Lus10018693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.