Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27750 503 / 2e-158 nucleic acid binding (.1) AT2G43410 46 / 0.0002 FPA RNA binding (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007756 [exp] 284 / 2e-87 AT1G27750 81 / 3e-17 nucleic acid binding (.1) Lus10007419 [exp] 46 / 0.0003 AT2G43410 627 / 0.0 RNA binding (.1.2.3.4) Lus10007734 [exp] 0 / 1 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G017000 [exp] 1122 / 0 AT1G27750 609 / 0.0 nucleic acid binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0616 [flax] [poplar] SPOC PF07744 [flax] [poplar] SPOC SPOC domain
Representative CDS sequence Show only first row Show all	>Lus10018694 pacid=23176224 polypeptide=Lus10018694 locus=Lus10018694.g ID=Lus10018694.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCCGAACAGCCACTCAAAAAGAGAAGGCTTTACGAGTTTCAATCGGAAGACCCACCTCCGCTACCGGTGGAACAGTCGCGTCCTGCAGCTA GCCCACTGCCCGCCGCCACCACCATCGCCGCTCAACCTGGAACGCCACCGCCGCTCTCACAAGAGGAAATTGTTTCAAGGCGGAGAAACCGAGATGAAAT CAAAAGTGTTTACGATACATACAAGCGGTTCAAGTATCTTATGTCCCAGAAAGAGGGCCGTCACTACTTTCCGGAGCTGGAACAATCATATTTAGCTCTC ATCGGTGTTTCAAGAGGATGTTCCAGTGTCCAGCGGATTGTGGCAGATCTAATTCCTCGATATGCCTTGAACTTCCCGACTGCTCTGCAATCTGCAGCAA AGGCTGTAACTGATATGCATGACTCAAGTCTGGCAGTAATAAAAAAAGGAGAGGACTACGATGATACTTCATTTGAGACTGCTAAAACCTGCATCTCTGG GTTAGCAGATATATGCCATGTTGCTGCCTCAGCAGCTCCTGTGTCATCTGACATACAAGGACTTGTGTCGGGAGCTTTCAGAAATGCTCTCTCTTTCTTT GTATCCTCAGATGAGGGAACGGAGATCTTACATTTCATTAATAATAATGGGCTCTTAAAGATCCAAGATTCTACTGAGCTCTTTTCTGAGCTGAAGGAGA AGTTCTGTCATGAAGATCATTCTTCACCAGTCAAATTATTCAAGTTACGTGCACTTTGTCTGCTGTGGATTTTCTTTTCTCACCCTAAGAAAATGGTTGC AGCTTGTTTTGAGCTTTTGAAGTCCTCTGAATCGGAGGAAGTTGTTAAAGGGCAACAGTTCGTCAATCTATTGACAAGCCAGCTTGGTATTGACTCCGAA GCAGGCTCCTTGCTGCATTTGGTATTACAGAAGCATGAATCAATGAGAAGCTGGATGTTCTTGAAATATGAGAAGTTCTTCAAGAAACCTTCTTCAATGG GCCATTCATTAGCATTTAGTCCTTCTTTGGAACATGTCTTTGATTCATTTCCAGAACTTAAGGATTTAGGGGATCTCCAAGTTGATAGTGATGAGGATGT GTCGGATCCCTCGAAACTTCTGAACCAACAATACTTAGTACACAGGAAATCCGGTGATCAAGATATCTATGGTGAACCACATAATAAAGATGGTTGCAGT CATGAGAGTGGATCATTGAGGTCCATGGATTGGGAGACTATTGAACCCGGGGGTTCTTCACATGTAATGTCTTCAATGCCCAGGGATGTAATGAACCAAC CTGTGGTTTCACCTGTTACGAGAAGACCTGTAAACTTACGGAATAATTCATTTGAGGCTAGAAGCCACAATGGCTCTGGTGACGAGAATCCTGTTTCAGC TGTGGGCTTCAGCTCCCCTGCCTTACGCTCGGCAGCTGGCGGATTTTCTAACACTTCTAATTCTCCCAGACAAAATCTTGGGGCACCTTATGGTTGCCAA TCTATTTGGTTCTGTGATGGAGATCCTAGTACTATGGAAATTTTTTCTGCTTCCAGGGAGCTGTGGGTTGGCTTTTTTAGTCCTGATGTATCTGAAGCTC ATTTAAGGTATGAGCTTGGCAGATTTGGTCCCATGGAACAATTTTTCTTTTTCCAAGTCCAGGGGTTTGCATTGGCTGAGTACAGGAACTTAATTGATGC AGTAAGGGCTCGTGAATACATGAGAATCCATTTTCTTTGGCAGATAAAGTTCATGGACGTTGGATTAGGAACTAGGGGTACTGTTAACGGGGCTGCAGTT GGTTCAAGTCGTTACGTTTATGCTGGAAACATTTCAAGTCAATGGGCAAGAGATGAACTTCTGCATGAATCAAGGAAGGTTATCTACAAAGGGCCTTACA TGGTTACTGACCTTTACAATGAAGGAGCACTGCTTATGGAATTTGAATCACCGGAAGAAGCTACTGCTGTCATGGTTCATCTCAGGCAGCATCGTAAGGA CAAATTTCTGCCTCCATCAGATGCTTCAACTTCTAATGTTGGAATGCCTCACATAGATGGTGCTAGGTTTATGCCAAGCTCTGCCGATACTGAGGCGAGG ACCATCAATGCTGGATATGTTGGTAATTGTACAAATGAATCAGGGCAAGCTCAAGCTATTCCAGAAAACCCAGCTGCTATTCCAGAAAACCCAGCTGACA GCGCTAGGAGAACGCTGTCCCATTTATCATCTTTACTCTCATCACTACGTACAAAACATAACATCAATCAGTTCGACAGTTCTATATATCAAGCCATGGG AAACATGGATCATGTGCCGTCTAGCACACTTTGGATTCATATACCCAATGTTGGCTCCCCTTTTCTCGCGGATGATGAATTAATGTCTGTTTGCAGCCTT GCTATCTCTAATGTTGGAACTATAGTTAGATTGCAATGGGCATATACGCAGATGGGTAATGGTTGGTTTGTCGAATGTAGCAATGTGGATGCAGCAATCA CTTGTTTAAAAACTCTCCGCAATAATCCAGGAACTTTCTTTCAGAACTTTTTTAAAGACGATTTTGTTTCTGGTGTCCGTTCCACTATCCCGTGGCAATT ATTTCGACACGGTACTCACATTTACACCCAGTTAGGTGAAGATATTATTGATGTGGATGGTGTCTTTGAGACTGATAAACGTTCTTCTACATGGGTGATT AATCAACAAGCTGCGATTGGCGGGGCACAATTCTCTGCCAAACCTGAGAACAGCCCTATGGATCTTGTTTCACCCACAATGAATTTGGAGAATGGTGGTG CTGCTGTGCATATTGGACATCCTTTTGGTTCTTCGAATCCTTCTCAAGGAGGAAACCATATTGCTGGTGCTGAACAAATGTGGATGTACAAGAACAATGA GACTGGTAGCTATCCTTGTGCGCCTGTGGGAACCCAGGGACAGGATATGCCTCCACCACCTCAGTTTCAGCAGGCGCCATATGCTCAACCTGTATACCAA CCTCCCAATAGTTCCTGGGATCTTCGGGGTTCAAATCATCATGTTCCTTTCAATCAGGAGCCATCAGCAGTGATGAATACTAGCTTCCAGGGAAGCACTG TTGCACCTCCTTTTGTGGCCGCATCATCGACTCCGTTAGCACAGGGACCAGGAGCTCCAGTGCAGCAATTTGACCAATCGTTTTCCCTAGGGGCTGTACC ACCACCTTCTCACAGGGAAGTACCTCCGTTACCACCGTCTCCTCCACCTGCTCCTCCTCCACCTAGCTCTCCCCCTCCCATTGCAGTATCAGCGGATACT GAGAGTTGTGTACATTCTACACAATATGAGTGGCAAGGTGCACTATGCAAAAGTGGTGTTCATTATTGTACCATATATGCACTTAGAGTGGAGTCGGAAG TTTGCAAGTACCTGAATGCTTTCTCAGAACCTTCAGAATGGCCAACTAAGCTCGACATGACAAAACGCACAGATTTTCGGCATGTGAAGTCTACATTTTC TAGTACCCCGACACATAAGAGAGAAGTCTGTCAATTACTGCCCTCCTCCTTAAGTGACCAAAAGGGGTATCAAGATTTTATATCGTACCTGAAGCAGAGA GAATGCGCAGGAGTGATCAAAATCCCAACTACGAAATCAATATGGGGAAGGCTTCTCTTCATACTTCCTTACTCAAAAGAAGTGTGCTCTATGCTGTGTA TCCCTCTTCCAGCTTCACCGTCTCAGGGTGGGTTGATTGGTCTGATTTTGCCTAAAGAAACCAACTTGGAGTGGGCTTAA
AA sequence Show only first row Show all	>Lus10018694 pacid=23176224 polypeptide=Lus10018694 locus=Lus10018694.g ID=Lus10018694.BGIv1.0 annot-version=v1.0 MASAEQPLKKRRLYEFQSEDPPPLPVEQSRPAASPLPAATTIAAQPGTPPPLSQEEIVSRRRNRDEIKSVYDTYKRFKYLMSQKEGRHYFPELEQSYLAL IGVSRGCSSVQRIVADLIPRYALNFPTALQSAAKAVTDMHDSSLAVIKKGEDYDDTSFETAKTCISGLADICHVAASAAPVSSDIQGLVSGAFRNALSFF VSSDEGTEILHFINNNGLLKIQDSTELFSELKEKFCHEDHSSPVKLFKLRALCLLWIFFSHPKKMVAACFELLKSSESEEVVKGQQFVNLLTSQLGIDSE AGSLLHLVLQKHESMRSWMFLKYEKFFKKPSSMGHSLAFSPSLEHVFDSFPELKDLGDLQVDSDEDVSDPSKLLNQQYLVHRKSGDQDIYGEPHNKDGCS HESGSLRSMDWETIEPGGSSHVMSSMPRDVMNQPVVSPVTRRPVNLRNNSFEARSHNGSGDENPVSAVGFSSPALRSAAGGFSNTSNSPRQNLGAPYGCQ SIWFCDGDPSTMEIFSASRELWVGFFSPDVSEAHLRYELGRFGPMEQFFFFQVQGFALAEYRNLIDAVRAREYMRIHFLWQIKFMDVGLGTRGTVNGAAV GSSRYVYAGNISSQWARDELLHESRKVIYKGPYMVTDLYNEGALLMEFESPEEATAVMVHLRQHRKDKFLPPSDASTSNVGMPHIDGARFMPSSADTEAR TINAGYVGNCTNESGQAQAIPENPAAIPENPADSARRTLSHLSSLLSSLRTKHNINQFDSSIYQAMGNMDHVPSSTLWIHIPNVGSPFLADDELMSVCSL AISNVGTIVRLQWAYTQMGNGWFVECSNVDAAITCLKTLRNNPGTFFQNFFKDDFVSGVRSTIPWQLFRHGTHIYTQLGEDIIDVDGVFETDKRSSTWVI NQQAAIGGAQFSAKPENSPMDLVSPTMNLENGGAAVHIGHPFGSSNPSQGGNHIAGAEQMWMYKNNETGSYPCAPVGTQGQDMPPPPQFQQAPYAQPVYQ PPNSSWDLRGSNHHVPFNQEPSAVMNTSFQGSTVAPPFVAASSTPLAQGPGAPVQQFDQSFSLGAVPPPSHREVPPLPPSPPPAPPPPSSPPPIAVSADT ESCVHSTQYEWQGALCKSGVHYCTIYALRVESEVCKYLNAFSEPSEWPTKLDMTKRTDFRHVKSTFSSTPTHKREVCQLLPSSLSDQKGYQDFISYLKQR ECAGVIKIPTTKSIWGRLLFILPYSKEVCSMLCIPLPASPSQGGLIGLILPKETNLEWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27750			nucleic acid binding (.1)		Lus10018694 [exp]	0	1
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10032537 [exp]	2.4	0.9202
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10027738 [exp]	3.5	0.9142
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	7.3	0.9169
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Lus10014931 [exp]	8.1	0.8887
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10028004 [exp]	9.3	0.9203
AT2G30470	B3	HSI2, VAL1	VP1/ABI3-LIKE 1, high-level ex...		Lus10011245 [exp]	9.5	0.9041
AT5G55600			agenet domain-containing prote...		Lus10003906 [exp]	16.8	0.8542
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	19.4	0.8941
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10009490 [exp]	19.7	0.9035
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Lus10038820 [exp]	22.9	0.8613

Compare expression of checked genes

Lus10018694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.