Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27450 303 / 8e-107 APRT, ATAPT1, APT1 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3) AT4G22570 290 / 1e-101 APT3 adenine phosphoribosyl transferase 3 (.1) AT4G12440 283 / 1e-98 APT4 adenine phosphoribosyl transferase 4 (.1.2) AT5G11160 257 / 2e-88 APT5 adenine phosphoribosyltransferase 5 (.1) AT1G80050 251 / 9e-86 PHT1.1, ATAPT2, APT2 adenine phosphoribosyl transferase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007757 [exp] 373 / 3e-134 AT1G27450 303 / 1e-106 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3) Lus10024612 [exp] 300 / 4e-105 AT4G22570 305 / 2e-107 adenine phosphoribosyl transferase 3 (.1) Lus10032249 [exp] 296 / 1e-103 AT4G12440 299 / 4e-105 adenine phosphoribosyl transferase 4 (.1.2) Lus10004344 [exp] 287 / 2e-100 AT4G22570 301 / 4e-106 adenine phosphoribosyl transferase 3 (.1) Lus10002924 [exp] 257 / 5e-88 AT5G11160 316 / 3e-111 adenine phosphoribosyltransferase 5 (.1) Lus10001497 [exp] 254 / 6e-87 AT5G11160 315 / 4e-111 adenine phosphoribosyltransferase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G017200 [exp] 318 / 3e-111 AT1G27450 277 / 2e-94 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3) Potri.001G121400 [exp] 287 / 2e-100 AT4G22570 298 / 9e-105 adenine phosphoribosyl transferase 3 (.1) Potri.006G255900 [exp] 270 / 3e-93 AT5G11160 315 / 4e-111 adenine phosphoribosyltransferase 5 (.1) Potri.018G026200 [exp] 269 / 6e-93 AT5G11160 313 / 2e-110 adenine phosphoribosyltransferase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10018695 pacid=23176265 polypeptide=Lus10018695 locus=Lus10018695.g ID=Lus10018695.BGIv1.0 annot-version=v1.0 ATGGCCGCAGCTAACGACCACCAAGATCCTCGCCTCGCTGGAATCGCTTCCGCGATTCGAGTCATTCCAGACTTCCCCAAGCCAGGGATTATGTTTCAGG ATATTACTACGCTGCTTCTTGACGTCAAGGCTTTCAAGGACACTATCGATTTGTTCGTGGAGAGGTACAAAGACAAAGGCATCTCCGTCGTTGCTGGTAT TGAAGCAAGGGGTTTCATATTTGGCCCTCCACTTGCATTGGCTATTGGAGCAAAATTTGTTCCATTGAGGAAGCCCAAAAAATTACCTGGGGAGGTTATA TCGGAAGAATACTCTCTGGAATATGGAACGGACAAGATTGAAATGCATGTAGGTGCTGTGCAAGCAGGTGAACGTGCACTGGTTGTAGATGATCTCATTG CAACTGGTGGGACCTTGAAGGCTGCAATCAATCTCCTAGAGCGTGTTGGGGTGGAAGTTTATGAATGCGCTTGTCTCATTGAGTTGCCTGAGTTGAAGGG TCGCGATCGATTGGGAGACAAGCCGTTGTTTGTCCTGGTCAGCTCTACCATCGAAGCAAATGATTTCTAA
AA sequence Show only first row Show all	>Lus10018695 pacid=23176265 polypeptide=Lus10018695 locus=Lus10018695.g ID=Lus10018695.BGIv1.0 annot-version=v1.0 MAAANDHQDPRLAGIASAIRVIPDFPKPGIMFQDITTLLLDVKAFKDTIDLFVERYKDKGISVVAGIEARGFIFGPPLALAIGAKFVPLRKPKKLPGEVI SEEYSLEYGTDKIEMHVGAVQAGERALVVDDLIATGGTLKAAINLLERVGVEVYECACLIELPELKGRDRLGDKPLFVLVSSTIEANDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10018695 [exp]	0	1
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10013741 [exp]	1.0	0.9820
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036086 [exp]	2.0	0.9820
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Lus10027904 [exp]	2.0	0.9768
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10031079 [exp]	2.6	0.9729
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	3.0	0.9777
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	3.2	0.9739
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040765 [exp]	3.5	0.9730
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10041000 [exp]	5.7	0.9682
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	7.4	0.9711
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	8.1	0.9692

Compare expression of checked genes

Lus10018695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.