Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49930 112 / 8e-31 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G67450 100 / 4e-26 C2H2ZnF AZF1 zinc-finger protein 1 (.1) AT3G19580 99 / 3e-25 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT1G27730 93 / 3e-23 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1) AT5G04340 92 / 4e-23 C2H2ZnF ZAT6, CZF2, C2H2 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1) AT5G43170 91 / 9e-23 C2H2ZnF AZF3 zinc-finger protein 3 (.1) AT1G02040 69 / 7e-14 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28200 66 / 6e-13 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G56200 62 / 2e-11 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT2G45120 61 / 3e-11 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032848 [exp] 116 / 4e-32 AT1G27730 149 / 1e-43 salt tolerance zinc finger (.1) Lus10004316 [exp] 112 / 1e-30 AT5G04340 134 / 3e-38 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1) Lus10033798 [exp] 93 / 4e-23 AT1G27730 146 / 3e-43 salt tolerance zinc finger (.1) Lus10014631 [exp] 90 / 1e-21 AT1G27730 144 / 4e-42 salt tolerance zinc finger (.1) Lus10028173 [exp] 71 / 2e-14 AT1G02040 124 / 4e-32 C2H2-type zinc finger family protein (.1) Lus10042872 [exp] 64 / 5e-12 AT2G45120 124 / 7e-32 C2H2-like zinc finger protein (.1) Lus10022610 [exp] 60 / 6e-11 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10009775 [exp] 54 / 2e-08 AT1G02030 128 / 5e-33 C2H2-like zinc finger protein (.1) Lus10030330 [exp] 53 / 2e-08 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G017300 [exp] 130 / 2e-37 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1) Potri.002G119300 [exp] 129 / 4e-37 AT1G27730 186 / 8e-59 salt tolerance zinc finger (.1) Potri.001G295500 [exp] 108 / 3e-29 AT1G27730 144 / 2e-42 salt tolerance zinc finger (.1) Potri.009G089400 [exp] 96 / 2e-24 AT3G19580 120 / 6e-33 zinc-finger protein 2 (.1.2) Potri.014G066200 [exp] 67 / 5e-13 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.002G143600 [exp] 66 / 2e-12 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 59 / 2e-10 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 57 / 8e-10 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.009G166200 [exp] 56 / 2e-09 AT4G35280 258 / 4e-85 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.008G051200 [exp] 53 / 6e-09 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018696 pacid=23176179 polypeptide=Lus10018696 locus=Lus10018696.g ID=Lus10018696.BGIv1.0 annot-version=v1.0 ATGCCACTCCAAGCTCTCAACTCTCCTACAGCGGCGGCACCCGCTCCTTCTCCCTTTCAATTCGATGACGATTCCAACAATCTCCTCCACCACCGCCGCC AGCTGGCTGATCAGCCATGGACCAAGCGCAAGCGATCCAAGCGTTCCCGTCTCCACGACCAGGAACAGCCCCCCACGGAGGAAGAGTATCTCGCTCTCTG CCTTGTCATGCTCGCTCGTGGTACAACCAATCTCCAATCCCAAGACTTCTCCCCTTATTATAAACGCTCTTCCTCCCCTGCTCCACCGCCGCCGGCCGAG GCAGATGAGCAGAAGCGGGCTTTCCCATCTTACCAAGCCTTGGGCGGACACAAGGCCAGTCACAGGAAATCAGTCTTGGCTGCGGCGGCGGCTGATGTAC ACGTCGACGGTGGCGGCGCTCCTGCTGTTGTTCAATCAACTTCTGGTATTACCACTACAACTAGCAGCAGCTCCGCTGCCGGAGCTGGGAAGGCTCACGA GTGTTCGATCTGCCATAAGAGTTTCCCCACCGGACAGGCTTTGGGCGGACACAAGAGGTGTCATTACGACGTGAATTAG
AA sequence Show only first row Show all	>Lus10018696 pacid=23176179 polypeptide=Lus10018696 locus=Lus10018696.g ID=Lus10018696.BGIv1.0 annot-version=v1.0 MPLQALNSPTAAAPAPSPFQFDDDSNNLLHHRRQLADQPWTKRKRSKRSRLHDQEQPPTEEEYLALCLVMLARGTTNLQSQDFSPYYKRSSSPAPPPPAE ADEQKRAFPSYQALGGHKASHRKSVLAAAAADVHVDGGGAPAVVQSTSGITTTTSSSSAAGAGKAHECSICHKSFPTGQALGGHKRCHYDVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49930	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10018696 [exp]	0	1
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10032848 [exp]	1.7	0.9564
AT1G76600			unknown protein		Lus10037249 [exp]	2.4	0.9195
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015897 [exp]	2.4	0.9431
AT5G04340	C2H2ZnF	ZAT6, CZF2, C2H...	COLD INDUCED ZINC FINGER PROTE...		Lus10004316 [exp]	3.9	0.9394
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10007493 [exp]	4.0	0.9333
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10043369 [exp]	4.2	0.9092
AT5G13200			GRAM domain family protein (.1...		Lus10031986 [exp]	4.7	0.9019
AT2G26530		AR781	Protein of unknown function (D...		Lus10032881 [exp]	6.7	0.9196
AT1G18210			Calcium-binding EF-hand family...		Lus10009059 [exp]	8.9	0.8800
AT3G20600		NDR1	non race-specific disease resi...		Lus10043067 [exp]	9.5	0.9037

Compare expression of checked genes

Lus10018696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.