Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37540 187 / 8e-60 AS2 LBD39 LOB domain-containing protein 39 (.1) AT5G67420 187 / 1e-59 AS2 ASL39, LBD37 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) AT3G49940 186 / 2e-59 AS2 LBD38 LOB domain-containing protein 38 (.1) AT1G67100 157 / 5e-48 AS2 LBD40 LOB domain-containing protein 40 (.1) AT1G68510 151 / 9e-46 AS2 LBD42 LOB domain-containing protein 42 (.1) AT3G02550 148 / 5e-44 AS2 LBD41 LOB domain-containing protein 41 (.1) AT1G07900 55 / 2e-09 AS2 LBD1 LOB domain-containing protein 1 (.1) AT2G28500 54 / 9e-09 AS2 LBD11 LOB domain-containing protein 11 (.1) AT2G31310 49 / 3e-07 AS2 LBD14 LOB domain-containing protein 14 (.1) AT3G26660 46 / 2e-06 AS2 LBD24 LOB domain-containing protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007758 [exp] 307 / 1e-106 AT3G49940 191 / 1e-60 LOB domain-containing protein 38 (.1) Lus10019292 [exp] 189 / 4e-60 AT3G49940 259 / 8e-87 LOB domain-containing protein 38 (.1) Lus10011530 [exp] 189 / 6e-60 AT3G49940 260 / 2e-87 LOB domain-containing protein 38 (.1) Lus10028470 [exp] 148 / 5e-46 AT1G67100 205 / 2e-68 LOB domain-containing protein 40 (.1) Lus10011645 [exp] 54 / 7e-09 AT2G28500 205 / 4e-67 LOB domain-containing protein 11 (.1) Lus10018993 [exp] 53 / 9e-09 AT3G26660 134 / 2e-41 LOB domain-containing protein 24 (.1) Lus10036130 [exp] 54 / 1e-08 AT2G28500 207 / 1e-67 LOB domain-containing protein 11 (.1) Lus10040313 [exp] 52 / 1e-08 AT5G66870 133 / 5e-40 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10033843 [exp] 52 / 4e-08 AT1G07900 143 / 8e-44 LOB domain-containing protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G119400 [exp] 208 / 2e-68 AT3G49940 198 / 5e-64 LOB domain-containing protein 38 (.1) Potri.014G017400 [exp] 204 / 8e-67 AT4G37540 196 / 4e-63 LOB domain-containing protein 39 (.1) Potri.005G145500 [exp] 194 / 3e-62 AT5G67420 244 / 2e-81 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) Potri.007G053600 [exp] 190 / 5e-61 AT3G49940 263 / 3e-89 LOB domain-containing protein 38 (.1) Potri.001G295700 [exp] 172 / 3e-54 AT3G49940 186 / 2e-59 LOB domain-containing protein 38 (.1) Potri.009G089600 [exp] 171 / 5e-54 AT3G49940 195 / 7e-63 LOB domain-containing protein 38 (.1) Potri.008G120600 [exp] 156 / 2e-47 AT1G68510 228 / 3e-75 LOB domain-containing protein 42 (.1) Potri.004G100100 [exp] 155 / 2e-46 AT3G02550 277 / 2e-93 LOB domain-containing protein 41 (.1) Potri.017G114500 [exp] 154 / 5e-46 AT3G02550 291 / 5e-99 LOB domain-containing protein 41 (.1) Potri.010G125000 [exp] 151 / 2e-45 AT1G68510 220 / 2e-72 LOB domain-containing protein 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10018697 pacid=23176227 polypeptide=Lus10018697 locus=Lus10018697.g ID=Lus10018697.BGIv1.0 annot-version=v1.0 ATGAGCTGCAACGGTTGCAGAGTATTGAGGAAAGGATGCGGAGAGAATTGCGTGCTGAGGTCATCCCTCCAATGGATTCCCACTCCTCAAGCACAAGGCA ACGCCACTTTGTTCCTCGCCAAATTCTTCGGCCGCAGCGACCTCCTCTCCTTTATCTCCTCCGTCCCCGATCCTCAACGCCCCGCTCTGTTCCAGTCGCT GCTATTTGAGGCGTGTGGGAGGACGGTGAACCCGGTGAACGGGGCGGTGGGGCTGCTGTGGAGCCGCAATTGGCACGTGTGTCAGGCGGCGGTCGATACC GTTCTCGCCGGAGGATCACTGCATCCGCTTCCGGGAATTGCGCCGCCGAATTTCGACGAGTCGGATGACAGCTTCTCCGCCGCGGGATTCGCTGCTCATC AGCTCCGGCCGGCGATTTTGGCGATTACTGGCGGGAATCAGAATCTCTCCTCGTCCTCCTCCACCTCGGAGTATCGACGTCGTCATAATGCTTCTCTGGT TGGTGGTGGGAATGAGAGAAGGATTAATAACAGAGATGTGAGGGCGTCGTTTTTTGCGGAGGAATCGGAAACGACGACATTCGAGAGCACCGGCGGCGAT CGGAAGAAGCTGCTGAATCTTTTTGTTTGA
AA sequence Show only first row Show all	>Lus10018697 pacid=23176227 polypeptide=Lus10018697 locus=Lus10018697.g ID=Lus10018697.BGIv1.0 annot-version=v1.0 MSCNGCRVLRKGCGENCVLRSSLQWIPTPQAQGNATLFLAKFFGRSDLLSFISSVPDPQRPALFQSLLFEACGRTVNPVNGAVGLLWSRNWHVCQAAVDT VLAGGSLHPLPGIAPPNFDESDDSFSAAGFAAHQLRPAILAITGGNQNLSSSSSTSEYRRRHNASLVGGGNERRINNRDVRASFFAEESETTTFESTGGD RKKLLNLFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67420	AS2	ASL39, LBD37	ASYMMETRIC LEAVES2-LIKE 39, LO...		Lus10018697 [exp]	0	1
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Lus10007758 [exp]	2.0	0.7669
AT5G01880			RING/U-box superfamily protein...		Lus10025228 [exp]	3.9	0.7455
					Lus10000543 [exp]	5.5	0.7171
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10039580 [exp]	8.5	0.7502
AT4G31140			O-Glycosyl hydrolases family 1...		Lus10024535 [exp]	13.1	0.7181
AT5G60890	MYB	AtMYB34, MYB34,...	ALTERED TRYPTOPHAN REGULATION ...		Lus10015713 [exp]	14.3	0.7007
AT5G47740			Adenine nucleotide alpha hydro...		Lus10043338 [exp]	21.8	0.6950
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10028236 [exp]	22.1	0.6003
AT5G47740			Adenine nucleotide alpha hydro...		Lus10019487 [exp]	27.1	0.6771
AT3G01570			Oleosin family protein (.1)		Lus10028035 [exp]	29.5	0.5300

Compare expression of checked genes

Lus10018697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.