Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49890 327 / 5e-103 QWRF2 QWRF domain containing 2, Family of unknown function (DUF566) (.1) AT3G19570 261 / 6e-78 SCO3, QWRF1 SNOWY COTYLEDON 3, QWRF domain containing 1, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT5G43160 184 / 1e-53 QWRF9 QWRF domain containing 9, Family of unknown function (DUF566) (.1) AT2G24070 189 / 7e-52 QWRF4 QWRF domain containing 4, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G30710 179 / 3e-48 QWRF8 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G25190 122 / 6e-30 QWRF7 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G44190 113 / 1e-26 EMB3116, EDE1, QWRF5 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) AT3G60000 108 / 7e-25 QWRF6 QWRF domain containing 6, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G20815 80 / 2e-15 QWRF3 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007760 [exp] 683 / 0 AT1G49890 127 / 1e-31 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10033792 [exp] 353 / 7e-113 AT1G49890 587 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10014636 [exp] 332 / 2e-106 AT1G49890 529 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10007759 [exp] 316 / 6e-105 AT5G43160 157 / 5e-48 QWRF domain containing 9, Family of unknown function (DUF566) (.1) Lus10010780 [exp] 194 / 3e-54 AT4G30710 398 / 5e-132 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10010779 [exp] 194 / 1e-53 AT4G30710 355 / 3e-114 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10022176 [exp] 192 / 8e-53 AT4G30710 408 / 1e-134 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10038729 [exp] 125 / 4e-30 AT2G44190 261 / 2e-81 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10039129 [exp] 123 / 2e-29 AT2G44190 268 / 6e-84 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G017500 [exp] 622 / 0 AT1G49890 282 / 8e-86 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.002G119500 [exp] 619 / 0 AT1G49890 380 / 2e-123 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.001G295800 [exp] 358 / 5e-115 AT1G49890 526 / 4e-180 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.009G089800 [exp] 317 / 2e-99 AT1G49890 516 / 4e-176 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.006G181700 [exp] 211 / 6e-60 AT4G30710 274 / 2e-83 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.018G103800 [exp] 208 / 1e-58 AT4G30710 261 / 2e-78 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.006G000400 [exp] 128 / 2e-31 AT2G44190 220 / 2e-66 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.016G000300 [exp] 120 / 9e-29 AT2G44190 226 / 1e-68 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.001G126000 [exp] 116 / 5e-28 AT4G25190 225 / 4e-70 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.013G146100 [exp] 87 / 9e-18 AT2G20815 218 / 1e-63 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04484 [flax] [poplar] QWRF QWRF family
Representative CDS sequence Show only first row Show all	>Lus10018698 pacid=23176193 polypeptide=Lus10018698 locus=Lus10018698.g ID=Lus10018698.BGIv1.0 annot-version=v1.0 ATGGTAGCTGAAGTGTCTGGTAAGAAAAACCCTTCCAAACCTAGGCCGATAGCTCAAAATCAGAACCCTGCTAGGCCCCCTCTGTTGCCTTCTGAATCGG ACAATGCTCTTGCTCCTCGCCGTCCCAGGCCTCGAGAAGTTACTTCTCGCTACATGTCTTCTTCTTCATCTTCGTCTTCATCAACTATGCCGTCAGCCTC CAAACGTTGTCCCTCGCCGTTGATTTCGCCGCCGAAGCCTTTGATGACTCCGGCCACGCCGTCTGTTCCTTCCACGATTAAACGGTCTCAATCTGTCGAG AGGATGAGGTCTCGTACGCCTACTGGGCGGCCTAATTCTATCGATTTGAGGATCGCAAATGGTTACGGAGGCCATGCCGGTACAGCGGGAGAAATGTCGA ATGCGCAGAAGCTGTTGATTACTTCAACGAGAAGCATGTCCGTATCGTTTCAGGGAGATTCGTTCGCGCTCCAGGTGAGTAAAGCCAAGCCGGCTCCGTC CCCGATCAGCGCGAGGAAAGGAACTCCGGAGAGACGGAAAGCGACGACTACAAGGACGGATCAGGCGGAGAACAATTCCAGGTCGGCTGAACAGCAGCGA CGATGGCCAGGTAGATTAAGAGAGCAGCCAATTTCAATGACTAAAAGCATGGATTGTACTGATGACAGGGAGAGAACTATCGGATCTGGAGTCAGTGTCG GCGTAGTTAGAGCCCTCCAGAGCTCCAGGTTGGATAGTAGGTCTTCAATTGAGAGCAAATTGAGCTCGGACTCTAGCGATGTCATCGAACCAGAAAAGCC TATCGAAATTAGCGGATCTGAAGTGCACTCTGATCCTCCGTTGCCTTCTGATACTGAAAGTGTATCCTCTGGTACCGCTTCGGAGGGGAGTTTGAATTCT GGAAGGCAACCACAAAGGTCTGGACGTGTTATAGTGGTGCCAGCGAGGTTTCGGCAAGAGACTAATAACGGAGTCCGTCCGAAACAGGAGCCTCTTTCAC CTGCTTCCAAGTTTGCACTCTCTATAGGACCTTTCCAGCCTAAAATTATGGCGCCCAAGAAGCTTGGAGTTGACAGTCCAGTGTCTTCACCCAAAGGTGT TACCAATACAAGGGGGCAGTCTCCCATGCGTGCTGGAGGACAAAGGCCTGCATCGCCGAGAAAGCTTGGGACAATGTCTGCTACGGTGACACCAATGAGG GGTACGAGTCCTTCTAGAACGAGGGATACAATGGGATGCTCAGTGAGCAGTAACATGAGCAATTTTGGTAATTCATCAACCTCTTCTATTTTGAGCTTCG GTGCTGATATAAGGAGAGGTAGAGGTGGGGAGACTCGGCTACTTGAGGTGCATTTTGTTAGGATTTTGTATAATCGACTGTTGCAATGGCGGTTTGTAAA CGCCAGAGCTGATGCTGCCCTTTCCACTCAGAGATTGAATGCTGAGAAAAGTCTGTACAGTGCACATCTAACAACGACAAGATTGCGGGAATCTGTTAGA GCAAAGAGAACAGAATTGCAATTGATTAGGCAGAATTTGAAGCTGGATTCCATCCTGAGGGGGCAGATGAAATATCTGGAGGATTTTGCAGTACTGGACC AAAATTACTCCTGTTCTTTATCAGTGGCCATTGAAGCTCTGCAAGCGAGCACACTTCGCCTGCCTGTTGTCGATGGTGCACGGGCAGATACGCTAAATGT GAGAGACGCCATCTGTTCAGCAGTTGATGTGATGCAAGCTATGGGATCTTCAATACGATTATCGCTATCAAGGGTTGGAGAAATGAAGTCTCTTGTGGCT GAACTTGGTAGCATGTCTGCAAAAGAGCTTCAGCTACTTGATGAATGCAGAGGCTTGCTGTCAAACCTTACAGCAATCCAGGTAAAAGAAAGCAGTCTGC GAACTCACATTGCACAGCAGAAGGCACTACTTGGCAATCCGGCAGCCGACGTGTAA
AA sequence Show only first row Show all	>Lus10018698 pacid=23176193 polypeptide=Lus10018698 locus=Lus10018698.g ID=Lus10018698.BGIv1.0 annot-version=v1.0 MVAEVSGKKNPSKPRPIAQNQNPARPPLLPSESDNALAPRRPRPREVTSRYMSSSSSSSSSTMPSASKRCPSPLISPPKPLMTPATPSVPSTIKRSQSVE RMRSRTPTGRPNSIDLRIANGYGGHAGTAGEMSNAQKLLITSTRSMSVSFQGDSFALQVSKAKPAPSPISARKGTPERRKATTTRTDQAENNSRSAEQQR RWPGRLREQPISMTKSMDCTDDRERTIGSGVSVGVVRALQSSRLDSRSSIESKLSSDSSDVIEPEKPIEISGSEVHSDPPLPSDTESVSSGTASEGSLNS GRQPQRSGRVIVVPARFRQETNNGVRPKQEPLSPASKFALSIGPFQPKIMAPKKLGVDSPVSSPKGVTNTRGQSPMRAGGQRPASPRKLGTMSATVTPMR GTSPSRTRDTMGCSVSSNMSNFGNSSTSSILSFGADIRRGRGGETRLLEVHFVRILYNRLLQWRFVNARADAALSTQRLNAEKSLYSAHLTTTRLRESVR AKRTELQLIRQNLKLDSILRGQMKYLEDFAVLDQNYSCSLSVAIEALQASTLRLPVVDGARADTLNVRDAICSAVDVMQAMGSSIRLSLSRVGEMKSLVA ELGSMSAKELQLLDECRGLLSNLTAIQVKESSLRTHIAQQKALLGNPAADV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10018698 [exp]	0	1
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	1.4	0.8910
AT2G01210			Leucine-rich repeat protein ki...		Lus10034108 [exp]	1.4	0.9059
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008947 [exp]	6.3	0.8391
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10006627 [exp]	8.4	0.8558
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10028360 [exp]	11.2	0.8289
AT3G52110			unknown protein		Lus10029522 [exp]	14.3	0.8630
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	14.5	0.8348
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	17.7	0.8235
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10036508 [exp]	18.3	0.8212
AT1G12530			unknown protein		Lus10006705 [exp]	18.5	0.7797

Compare expression of checked genes

Lus10018698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.