Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43140 253 / 2e-83 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G33905 231 / 1e-74 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT2G14860 225 / 2e-72 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G19750 88 / 1e-19 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G04470 81 / 5e-18 PMP22 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G14305 76 / 4e-16 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT2G42770 77 / 5e-16 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT1G52870 74 / 1e-14 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT3G24570 68 / 4e-13 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT4G03410 67 / 2e-12 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007761 [exp] 448 / 2e-157 AT5G43140 223 / 1e-70 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10002118 [exp] 226 / 4e-72 AT2G14860 292 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10011424 [exp] 222 / 9e-71 AT2G14860 288 / 3e-98 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10034922 [exp] 82 / 7e-18 AT3G24570 330 / 4e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10023648 [exp] 82 / 9e-18 AT3G24570 330 / 6e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10001421 [exp] 80 / 4e-16 AT2G42770 274 / 7e-90 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10038626 [exp] 76 / 7e-16 AT3G24570 273 / 1e-93 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10039003 [exp] 74 / 4e-15 AT5G19750 241 / 1e-79 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10012098 [exp] 75 / 5e-15 AT5G19750 259 / 4e-86 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G090600 [exp] 238 / 5e-77 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.001G296400 [exp] 236 / 3e-76 AT2G14860 300 / 6e-103 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.014G017800 [exp] 176 / 3e-54 AT5G43140 183 / 2e-58 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.016G029700 [exp] 89 / 4e-20 AT5G19750 257 / 5e-85 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.006G032500 [exp] 88 / 1e-19 AT5G19750 279 / 8e-94 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.010G032900 [exp] 85 / 5e-19 AT2G42770 271 / 9e-93 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.018G037100 [exp] 82 / 5e-18 AT3G24570 289 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.018G081600 [exp] 74 / 4e-15 AT3G24570 309 / 7e-108 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.011G123700 [exp] 68 / 2e-12 AT1G52870 472 / 1e-167 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.001G404600 [exp] 67 / 4e-12 AT1G52870 438 / 6e-154 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04117 [flax] [poplar] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Lus10018700 pacid=23176290 polypeptide=Lus10018700 locus=Lus10018700.g ID=Lus10018700.BGIv1.0 annot-version=v1.0 ATGAGCACCATCACCATCAGGGCACTTCGGAAACGCCTCCTCCACGGAGGTTTCTGGATGAAGGTAGCTTGCTTCGGGAATCAATCGTCGACGTTCTCCA ATTTCAGCGGTGGCGCTACGCAGGCGTACAGAACCAACGGGAGTAGTAGTTCCAGGATCCTTCATTTTCCTCCGTCGACGACGAATGTTGTGCCGCCAAA CTCCTCTTCCCGGTGGTTCTCGACATTGCCTCCTTCAAAATCGAGGTTCGGTTTCATCCAGTGGTACCTGGACAGGCTCGAGTCACAACCCATGCTCACG AAAGCCATTACCACGTCGCTGATTTACGCCGCTGCCGATCTCACTGCTCAGATGATTGCAGGATCAACATTAGATACTGTAAGGACGTTACGCATGGCTG GATATGGGTTGATGTTCTTGGGACCGGCACAGCATTTGTGGTTCAATCACATGTCCAAGATTCTACCACAGCGTGATGTGCTTTCTACCATGAAGAAAAT TTTCCTGGGACAGACAGTTCTTGGACCAGCTAATGCTGCTCTCTTCTTTTCGTATAATGCTGCTTTACAAGGGGAAAGTGGTGAAGAGATCATTGCTAGA TTGAAGCGTGACCTCCTACCAACCTTGTTGGGGGGTCTAATATTCTGGCCAATGTGTGATTTCTTGACGTTCAAAGCTGTCCCTGTGCCTTTACAGCCAT TGGTGAACAGCTCGTTTGCTTACGTTTGGACAATCTATTTGACATACATGGCAAGCTTGGAAAAAGCAAATCTTTTCACAAAGATTCTCAAAAGACAGGT TACCGTATCCTCATCAAGAACTCCATCGAGAACACTATCGACGGGAAGGCGGGAAAGTTTCTTTGTGCATCAGTTATTGCCACGGAATTCAAAGCAATAC TTGAAGCAGTCGAAGTTGCTTCTCAAAGCCACCTCAGTACCATTTTCGCTCTGGCTGCTTAGACCTCATCAGTCATCACGGCTACCCGCAACCTTAAAGA CCGCTGACCTTGGCTCTCCATCGGCGATCTGGGTCGCATCGGTTGAAGGTGTCACTTCTTGA
AA sequence Show only first row Show all	>Lus10018700 pacid=23176290 polypeptide=Lus10018700 locus=Lus10018700.g ID=Lus10018700.BGIv1.0 annot-version=v1.0 MSTITIRALRKRLLHGGFWMKVACFGNQSSTFSNFSGGATQAYRTNGSSSSRILHFPPSTTNVVPPNSSSRWFSTLPPSKSRFGFIQWYLDRLESQPMLT KAITTSLIYAAADLTAQMIAGSTLDTVRTLRMAGYGLMFLGPAQHLWFNHMSKILPQRDVLSTMKKIFLGQTVLGPANAALFFSYNAALQGESGEEIIAR LKRDLLPTLLGGLIFWPMCDFLTFKAVPVPLQPLVNSSFAYVWTIYLTYMASLEKANLFTKILKRQVTVSSSRTPSRTLSTGRRESFFVHQLLPRNSKQY LKQSKLLLKATSVPFSLWLLRPHQSSRLPATLKTADLGSPSAIWVASVEGVTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43140			Peroxisomal membrane 22 kDa (M...		Lus10018700 [exp]	0	1
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	3.9	0.8412
AT4G28600		NPGR2	no pollen germination related ...		Lus10023748 [exp]	6.9	0.7964
AT2G21180			unknown protein		Lus10026283 [exp]	9.9	0.7541
AT3G03773			HSP20-like chaperones superfam...		Lus10010669 [exp]	11.8	0.7683
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10017640 [exp]	14.3	0.7714
AT1G53025			Ubiquitin-conjugating enzyme f...		Lus10028151 [exp]	16.3	0.7557
AT5G59250			Major facilitator superfamily ...		Lus10040772 [exp]	16.5	0.7437
					Lus10000458 [exp]	17.0	0.7173
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10006777 [exp]	20.2	0.7832
AT5G23200			unknown protein		Lus10010192 [exp]	21.5	0.7552

Compare expression of checked genes

Lus10018700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.