Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43130 526 / 7e-174 TAF4, TAF4B TBP-associated factor 4B, TBP-associated factor 4 (.1.2) AT1G27720 330 / 2e-100 TAF4b TBP-associated factor 4B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007763 [exp] 1568 / 0 AT5G43130 576 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Lus10033265 [exp] 1209 / 0 AT5G43130 404 / 1e-127 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Lus10008297 [exp] 1192 / 0 AT5G43130 448 / 3e-144 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Lus10038047 [exp] 204 / 1e-59 AT5G43130 145 / 1e-39 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G119900 [exp] 784 / 0 AT5G43130 634 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Potri.014G018000 [exp] 748 / 0 AT5G43130 605 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12174 [flax] [poplar] RST RCD1-SRO-TAF4 (RST) plant domain CL0012 [flax] [poplar] Histone PF05236 [flax] [poplar] TAF4 Transcription initiation factor TFIID component TAF4 family
Representative CDS sequence Show only first row Show all	>Lus10018701 pacid=23176232 polypeptide=Lus10018701 locus=Lus10018701.g ID=Lus10018701.BGIv1.0 annot-version=v1.0 ATGAAAAGAAAGGTTGTGGACAAGTCTGGTGATCTTGGAAATTTGCTCATCTTGTCAATCTGTGCTGGCTCTAGTGTCTATTTCATGCAACCTCAGGATG AAACGATGCATTCTGGTGCTGACGTGGAGGCTTTCCAGGCTGCACTAAATCGGGATATCGAAGGGGACAAAAATTCCACTTCCCAGACACATGATTCGAA TGTAGTAGCTTTTCTGAATGAAGGGAACCAAGGTTCCTCTCAGCCATTTCAAAGCTGGCCATCGAGAGAAGATGGAATTCCAGCTGGTTCAAGCAACCAG GGGCTACATAATTTATCACATGCACAACACTTATCACACCAACACCAGCAGTCATCTATGGTGCTCGATCAACACTCATCTTTAGCTGAGAAACATCAGC AACATAATGATGTGTCACAGGGACAAAATCAATCAACAATGCATCAGAACCAACCCCAAGACGATCAACATGGGAAGGTGGAACAGCCGCCTACTCAAGC ACACCGGACCACTGAGATCTCAATCTCTGATAAAAGTTCAGCTCCAATATCTGAGCCTGGAAAATCACAGAATTCTGCTGCTGAATCCCATTACCTAAAG TATTCTAAGATGCCCCAACAGATGACAGGCACAGAACAGGCCATGAACTCAAATAATCAAGGAAAGCAAATACCATTTGTGTTGCTGCTCCCTGCCTTAA AACCCCATCTTGATAAAGACAGAGAGATGCAGCTTCAGACCATCTTCAATAAACTAAAGAGAAATGAAATCCCGAAGGATCAGTTTGTCAGACATTTGAG GACTATCGTAGGGGATCAAGTGCTGAAGCTGGCAGTAGCTCAGTGGCAATCACAGTCTCAAGCTTTAGCTCGTCCACAAAATAACAGGATGCCCGTCGGT TCCAATCCCTCTCAACTCCCTGATGGCCATCCATTTGCACTTCCAACGGGATCAAGTTCTTCTACAGACACAGCTTACCATGGTCATCCATCAGTAAAAT TGCAGGCTGATAGTTCGAATCATGCCCTTACCAGTACCATTAATCCCAAAACCCGACAGGTTGATTCTCATGCAGTCAACTTTAGCCAAATGACTTCAGC CAGTGCAAACATAGTCAACCAAGACAGAGATTCCTCTTCAATTCCAACACAAGGACACAACAAGCAAAACCAACATTTACACTTTCCACAGACGTCCTTT CCCATGTATGGGGGTACTGGAAGTAATTTTCCCCCATACTCTGGTACTGGGAAAAATGTTTCAGGCGCTTCTATGAAGCCACAGCCTCCAGAGATACAAA TGAGACACATTTCACATCATCAAAGTATGGGTATAAATCAAGTAGGAACACCCAGCCAGGCAATGAGCACCCTGAATGTGCCAAAATTAGAGAGGCAAGG TTCTGTTACTGATGCTAACAGACTGTATAGTGGCTCAATGTCCGCTTATCCTAGCCGGCCAGCATTGCAGCAAAATCAAGTTCCTTGGCAAACATCAACA AACAAAGACCAAAGTCACGTCCCATTTTCTCCTATGAATTCTGTAAAACAGGAAGTAGTTGAGCAGGCTGGTGAGCAGTCACAGAAATCCCAGTTTGGGA ACCATCACGAGTTATCTGCGGGTACTGAGCAAGGAAACACAATGTTGGGGAGTTTCAGGGACAATTCAGATAAGCATCCTTCAAGCGTCAGTTTCTCAAC AGCCTCTGATACTGCGCCCTCAAGTTCAGTTGGTCCTTCCAATACGACTCAGATGGATCATAATACCCAGGTTGGCCCCAGGGTTCCTCCCTCTTCTGCT CCACTGAATACAAAAACTCCCCTTAAAAAACCTTCCGTGGGGCAAAAAAAACCACTAGAAGCACTTGGATCTTCACCGTCTGCAGCAAGTAAGAAACAGA AAGTTTCTGGTGCCTTTTTGGATCAAAGCATTGAACAACTGAACGATGTCACTGCTGTCAGTGGAGTTAATATTCGGGAAGAGGAAGAACAATTATTCTC TGCGACCAAGGAGGACAGTCGAGTCTCTGAAGCATCTAGAAGAGTTGTACAAGAAGAAGAAGAGAGGCTGCTTTTGCAGAAAACTCCTCTTCAGAAAAAA GTGGCTGAGATCATGGCCAAGTGTGGTCTGAAGAACGTCAGCAGTGATGTTGAAAAATGCTTGTCCTTGAGTGCATCTCTACAGAGGATTGACTCAGAGA AGTCCAGACACAGGACAGTAGTTACCTCTGATGTCCGGCAACAACTCGTGACAATGAACCAGGAAGCTAAGTCTGAATGGGAGAAAAACCAGGCTGAAGC AGAAAAGCTCCGGAGAGTAAATGAACCTGATGCTGATGGTGGATCCGAAGGTGACAGGGAAAAGGACGATGGGCGAGGAAAAGCAACCAAGGTGAACAAG GAGGAGGATGACAAAATGAGAACAAACGCTGCAAATGTTGCTGCTAGAGCTGCTGTTGGGGGAGATGACATGTTGTCAAAATGGCAACTCATGGCCGAGC AAGCTCGACAGAAACGTGAAGGGGGTCCAGATACTGCATCGTCTTCTCAATCGCCATCAGATGGAAGCTATAAGCCTCAGACATTGGCTGGAAAGAACAA CAATCAAGATGGACAAAAGAACGCTGCTTCAACATCCTTGGGTGGTGGAAAATTTGGGAGGAACAACGGAGCAGCAGCTCAGTTGAGGGAGGACCGGACT TTATCTATCAAGGATGCGATTGCAGTGATGGAACGAGAACCCCAACTGTCCAAGTCGACCTTGATTTATAAACTATATGAGAAGATCCGGTCGAATGTGC CACCCGAGTGA
AA sequence Show only first row Show all	>Lus10018701 pacid=23176232 polypeptide=Lus10018701 locus=Lus10018701.g ID=Lus10018701.BGIv1.0 annot-version=v1.0 MKRKVVDKSGDLGNLLILSICAGSSVYFMQPQDETMHSGADVEAFQAALNRDIEGDKNSTSQTHDSNVVAFLNEGNQGSSQPFQSWPSREDGIPAGSSNQ GLHNLSHAQHLSHQHQQSSMVLDQHSSLAEKHQQHNDVSQGQNQSTMHQNQPQDDQHGKVEQPPTQAHRTTEISISDKSSAPISEPGKSQNSAAESHYLK YSKMPQQMTGTEQAMNSNNQGKQIPFVLLLPALKPHLDKDREMQLQTIFNKLKRNEIPKDQFVRHLRTIVGDQVLKLAVAQWQSQSQALARPQNNRMPVG SNPSQLPDGHPFALPTGSSSSTDTAYHGHPSVKLQADSSNHALTSTINPKTRQVDSHAVNFSQMTSASANIVNQDRDSSSIPTQGHNKQNQHLHFPQTSF PMYGGTGSNFPPYSGTGKNVSGASMKPQPPEIQMRHISHHQSMGINQVGTPSQAMSTLNVPKLERQGSVTDANRLYSGSMSAYPSRPALQQNQVPWQTST NKDQSHVPFSPMNSVKQEVVEQAGEQSQKSQFGNHHELSAGTEQGNTMLGSFRDNSDKHPSSVSFSTASDTAPSSSVGPSNTTQMDHNTQVGPRVPPSSA PLNTKTPLKKPSVGQKKPLEALGSSPSAASKKQKVSGAFLDQSIEQLNDVTAVSGVNIREEEEQLFSATKEDSRVSEASRRVVQEEEERLLLQKTPLQKK VAEIMAKCGLKNVSSDVEKCLSLSASLQRIDSEKSRHRTVVTSDVRQQLVTMNQEAKSEWEKNQAEAEKLRRVNEPDADGGSEGDREKDDGRGKATKVNK EEDDKMRTNAANVAARAAVGGDDMLSKWQLMAEQARQKREGGPDTASSSQSPSDGSYKPQTLAGKNNNQDGQKNAASTSLGGGKFGRNNGAAAQLREDRT LSIKDAIAVMEREPQLSKSTLIYKLYEKIRSNVPPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	0	1
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10007763 [exp]	1.4	0.7544
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10013798 [exp]	2.0	0.7623
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10014018 [exp]	3.0	0.7449
AT5G51180			alpha/beta-Hydrolases superfam...		Lus10042993 [exp]	5.7	0.6932
AT2G19710			Regulator of Vps4 activity in ...		Lus10040542 [exp]	8.1	0.7025
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	10.4	0.7292
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10022474 [exp]	11.8	0.6534
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002604 [exp]	14.5	0.7054
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032660 [exp]	15.0	0.7184
AT3G07550			RNI-like superfamily protein (...		Lus10041087 [exp]	15.3	0.6974

Compare expression of checked genes

Lus10018701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.