Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 604 / 0 ARA12 Subtilase family protein (.1) AT2G05920 472 / 3e-156 Subtilase family protein (.1) AT5G51750 446 / 6e-146 ATSBT1.3 subtilase 1.3 (.1) AT4G34980 441 / 7e-144 SLP2 subtilisin-like serine protease 2 (.1) AT3G14067 436 / 5e-142 Subtilase family protein (.1) AT3G14240 435 / 1e-141 Subtilase family protein (.1) AT1G01900 376 / 5e-119 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 374 / 2e-118 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 369 / 5e-116 ATSBT5.4 Subtilase family protein (.1) AT1G04110 357 / 7e-112 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007765 [exp] 896 / 0 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10014853 [exp] 613 / 0 AT5G67360 806 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 610 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 595 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 587 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 483 / 3e-160 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 483 / 6e-160 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10008116 [exp] 454 / 2e-152 AT3G14067 632 / 0.0 Subtilase family protein (.1) Lus10034496 [exp] 432 / 1e-144 AT4G34980 670 / 0.0 subtilisin-like serine protease 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G018900 [exp] 707 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 701 / 0 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.005G145300 [exp] 523 / 6e-177 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 486 / 2e-161 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 454 / 4e-149 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.001G167300 [exp] 450 / 2e-147 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 449 / 4e-147 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.015G133800 [exp] 449 / 4e-147 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.009G133400 [exp] 444 / 5e-145 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.003G067000 [exp] 439 / 2e-143 AT3G14067 969 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0632 [flax] [poplar] FERM_M PF00887 [flax] [poplar] ACBP Acyl CoA binding protein CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10018702 pacid=23176291 polypeptide=Lus10018702 locus=Lus10018702.g ID=Lus10018702.BGIv1.0 annot-version=v1.0 ATGGAGCTTTTTCAGGAGCTCTTGATCACCTTACTTGTTGCTATTTTCATCTCTTTTCTCATCGCCAACGTCGTTTCCTCAAGGAGATCAGGTGATCAGA ACGGCGTGGGAGGATTGAGAGAAGAAGTCAATGCCGGACGATTGGAAGCTACGAGGCTAGGTAGCGAAGGGCGAGCTGAGCTTGTTGGAGAAAAAGCAGT GGCGGAAAGAGTTGAGGGATTTGTTGGAGAACCGGCTCCGGTTGAGGAAGAATCCAGCGTAGACGAACGCCGGGAATTGACCGAGGAAGGAAGAGAGGCC GAAGAGGAGGTACAAACACAAAGAGAGTTTGTGCCTGAGGAGATGGAAGACGGAGTTACGAAATCGGGCGACGATCATCAGAATCTTGTTCAAGTTGCCG CGGAGAAGACTGGAGAAAAAGAAATCGTTGCTGACGAGGGGAAAGAAGGAAATTCTGTGGAAAATGAAGCTGTTGAGATTGAATCAGCTCCTCATACTGA GCGGCCCGAGGAAATCAGCATGGTGGAGGAGGAAGAAGCAAGGGATGGAGTTGCTGAAGAGAAGAAAGTAGAGATTGATATAGAGGATGATTGGCAAGGG ATTGAGAGGAGTGATTTGGAGAAGGAGTTTGCTAAAGCTGCAAAGTTTGTGGAGTCTGGATATGGGGAAAAGAAGTTAGCAAGCGTTGGGAGCGATGTAG TGATGGAGTTGTATGGGCTTCATAAGCTTGTTACTGAAGGGTCTTGCCATGAACAGCCACCAATGGCTCTCAAGCTCTCTGCTCGTGCCAAGTGGAATGC GTGGCAGAAGCTTGGAAATATGGATCCGGAGGTGGCGATGAAGCAGTATGTCAATCTTCTATCAGATAGTGTCCCACAGTGGGCGGATCAACAATATATG GGGATATTTGTGTCCTGCTCTGCAGGGAATGGAGGGCCGAGTCAAGGTAGCTTGTCGAACGTTGCTCCATGGATAACAACCGTGGGGGCCGGCACACTGG ATCGGAATTTCCCTGCTTATGTAACCTTGGGAACCGGGAACAATTTCACCGGAACGTCGCTTTACAGTGGGAAGCCTCTCCCGGAAAAAACGCTGGTCCC ACTGGTTTACGCTGCAAACGCGAGCGATTCCGTCTCTGGAAATCTCTGTCAGTCGGACAGTCTGATTCCGGCGAAAGTTGCAGGGAAAATCGTGATATGC GATCGTGGTGGGAACAGCAGAGCAGCAAAGGGTCTGGAAGTGAAGAAATCCGGTGGGATCGGGATGATTCTGGCTAATACAGAGCTATTCGGGGAAGAGC TGGTTGCGGATTCACACCTTATACCATCATCAGCAGTAGGCCAGAAAGTTGGGGATGCTCTTAAAAAGTATGCATCGTCCGATCCAAAACCAACGGCCAC GATCTCTTCCGGCGGGACACATGTCGGGATCGAGCCGTCGCCGGTTGTTGCGGCGTTCAGTTCCAGAGGCCCCAATCTGGTGACTCCGGAAATTCTCAAA CCTGATGTAATCGCGCCGGGGGTTAACATCTTGGCTGGATGGACAGGCGCCATAGGTCCGACTGGGCTAGCAAACGACACCAGAAGCGTCAGCTTTAACA TCATTTCAGGAACTTCAATGTCTTGCCCTCATGTAAGCGGCTTAGCTGCGTTGGTCAAGGCTGCTCACCAAGATTGGAGCCCAGCAGCGATTAGGTCTGC TCTTATGACCACTGCCTATACTGCTTACAAAACTGGAGGGGTGATCCAAGACGTGTCAACTGGGAAACCGGCGACTCCGTTTGATTATGGTGCTGGACAT GTTGACCCGGTTGAAGCGCTAGATCCGGGACTTGTGTACGACGCAATGGTGGAGGACTATTTCGGGTTTCTATGTGCTTTAAACTACACGCCGGAGTTGA TCAAAAGAGCAACCAACAAGGCCTTTACTTGCGACTCGAGGAAAAGGTACAGTCTGGGTGATTTTAACTACCCGTCTTTCTCTGTTGCTCTTGAAACAGC TTCAGGGAAAGGAGGGGGTTCTGGTTCGACCGCGACAGTGAAGTATAGCAGGACGCTTACGAATGTAGGGTCTCCCGGGACTTATAAGGTGGAATTGGCG TCGGAAACTAAGGCGGTGAAGATGACGGTTGAGCCGGCAACCCTGACCTTTGCACAAGAGAAGGAGAAGAAGAGTTATACTGTGACGTTTACAGCAAGTT CGATGCCTTCAGGAACAACTAGCTTTGCTCATCTGGGATGGTCTGATGGGAAGCATATGGTTCACAGTCCCATAGCTTTCACCTGGGCATAA
AA sequence Show only first row Show all	>Lus10018702 pacid=23176291 polypeptide=Lus10018702 locus=Lus10018702.g ID=Lus10018702.BGIv1.0 annot-version=v1.0 MELFQELLITLLVAIFISFLIANVVSSRRSGDQNGVGGLREEVNAGRLEATRLGSEGRAELVGEKAVAERVEGFVGEPAPVEEESSVDERRELTEEGREA EEEVQTQREFVPEEMEDGVTKSGDDHQNLVQVAAEKTGEKEIVADEGKEGNSVENEAVEIESAPHTERPEEISMVEEEEARDGVAEEKKVEIDIEDDWQG IERSDLEKEFAKAAKFVESGYGEKKLASVGSDVVMELYGLHKLVTEGSCHEQPPMALKLSARAKWNAWQKLGNMDPEVAMKQYVNLLSDSVPQWADQQYM GIFVSCSAGNGGPSQGSLSNVAPWITTVGAGTLDRNFPAYVTLGTGNNFTGTSLYSGKPLPEKTLVPLVYAANASDSVSGNLCQSDSLIPAKVAGKIVIC DRGGNSRAAKGLEVKKSGGIGMILANTELFGEELVADSHLIPSSAVGQKVGDALKKYASSDPKPTATISSGGTHVGIEPSPVVAAFSSRGPNLVTPEILK PDVIAPGVNILAGWTGAIGPTGLANDTRSVSFNIISGTSMSCPHVSGLAALVKAAHQDWSPAAIRSALMTTAYTAYKTGGVIQDVSTGKPATPFDYGAGH VDPVEALDPGLVYDAMVEDYFGFLCALNYTPELIKRATNKAFTCDSRKRYSLGDFNYPSFSVALETASGKGGGSGSTATVKYSRTLTNVGSPGTYKVELA SETKAVKMTVEPATLTFAQEKEKKSYTVTFTASSMPSGTTSFAHLGWSDGKHMVHSPIAFTWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10018702 [exp]	0	1
AT2G37150			RING/U-box superfamily protein...		Lus10023507 [exp]	1.7	0.9733
AT2G37150			RING/U-box superfamily protein...		Lus10040389 [exp]	2.0	0.9701
AT2G10950			BSD domain-containing protein ...		Lus10027706 [exp]	3.2	0.9642
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	3.5	0.9642
AT2G24550			unknown protein		Lus10026939 [exp]	8.1	0.9562
AT1G48300			unknown protein		Lus10038034 [exp]	8.4	0.9533
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	9.3	0.9648
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10022727 [exp]	10.1	0.9597
AT5G49710			unknown protein		Lus10000765 [exp]	10.2	0.9587
AT2G35830			unknown protein		Lus10040372 [exp]	10.6	0.9255

Compare expression of checked genes

Lus10018702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.