Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27700 264 / 5e-87 Syntaxin/t-SNARE family protein (.1) AT4G30240 140 / 3e-39 Syntaxin/t-SNARE family protein (.1) AT2G18860 138 / 3e-38 Syntaxin/t-SNARE family protein (.1.2) AT1G28490 50 / 5e-07 OSM1, ATSYP61, SYP61 syntaxin of plants 61 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007766 [exp] 640 / 0 AT1G27700 292 / 2e-98 Syntaxin/t-SNARE family protein (.1) Lus10021360 [exp] 117 / 2e-29 AT4G30240 108 / 1e-26 Syntaxin/t-SNARE family protein (.1) Lus10017038 [exp] 112 / 9e-28 AT4G30240 105 / 3e-25 Syntaxin/t-SNARE family protein (.1) Lus10039880 [exp] 42 / 0.0006 AT1G28490 271 / 4e-91 syntaxin of plants 61 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G019100 [exp] 398 / 5e-139 AT1G27700 276 / 1e-91 Syntaxin/t-SNARE family protein (.1) Potri.018G093400 [exp] 152 / 2e-43 AT4G30240 263 / 8e-87 Syntaxin/t-SNARE family protein (.1) Potri.006G168800 [exp] 144 / 2e-40 AT4G30240 273 / 9e-91 Syntaxin/t-SNARE family protein (.1) Potri.017G125000 [exp] 122 / 9e-32 AT1G27700 106 / 6e-26 Syntaxin/t-SNARE family protein (.1) Potri.004G090200 [exp] 116 / 2e-29 AT1G27700 97 / 1e-22 Syntaxin/t-SNARE family protein (.1) Potri.011G059700 [exp] 49 / 2e-06 AT1G28490 310 / 2e-107 syntaxin of plants 61 (.1.2) Potri.004G050800 [exp] 42 / 0.0004 AT1G28490 297 / 2e-102 syntaxin of plants 61 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09177 [flax] [poplar] Syntaxin-6_N Syntaxin 6, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10018703 pacid=23176228 polypeptide=Lus10018703 locus=Lus10018703.g ID=Lus10018703.BGIv1.0 annot-version=v1.0 ATGACAACGAGTTTTGATCGGTGGGAGAAGGATCCATTCTTCTCTGCTGCTGAGGAAGTTCAGGAGTCTGCAGACAGGATGGAATCGACTTACAGAACAT GGCTTCATGCCAAGAAAGATAGTTCCACCATGTGGGACTCTGAGGAGCTACGCCGGGATTTACAGACAACTCTGGGAACCACCAAATGGCAGCTAGAGGA ATTTGCTAGGGCTGTCAAGTCGAGTTACATTGATAGCTCCACCGATGGTGCAAGAGAAAGGCATCGTCAATTCATAGTTGCAATGGAGGACCATATTTCT AGAGTGGAGGCTTCTCTTAAGGAATCTGCCCATTCAGGAGGCAATGCATCATTGTCTTGGGTGAGCTTGGATGAAGGTGAGCGCAATGAACTTGCTGCGT TTCTGTCAGGGCCAGCAATATTCAGAGGAGATAATACTACAAAAAGTGATGGGAGTAATAAGAATAAGGAAGAATCAGTTTCTGATTTCTCAAAAGACTC CAATCACTCTGTGGAGTGTGGTTGTCCAGAGGCCAAAGAGGAGACTTCTTATGGGCACAGGAGGTCGGCTAGTGCAGGTGCTAATATCAGTGCTTGGATG ATTCCGATTGGTGAAGCTAGTGTCAAGCAGGATTTCGTTGAGGCGGACATCCAACGTCCTCCCAGAAAGATACCTAGTCTCTCTACAATAGTAGGCTCGA TTGAATCTATGCCAAAACTGAAATGGCCCAAGAATAGTGTTAGGAAGTGGAAGGCAATGGATCGTTGTGAAGAATCTGATTCTATACCGCTACATTCTTC ACAATTGACTAGGAGTGTTGGTTCATGCTTTGAGAAAAGCAAGAGCTATTTGGGTAGCTGTGATGAATGTTATGATAAGCCCCTTTATGGCTGGTATGGT GCATTGCAGAGACAGTTTCAAAGATCTCAATATCAGATGCAATATGGTCGTCCCGTTCAGTCAGCCTTGTCAATTTTTGTTCTGTTCTTCTTCATTGGTG AGCACACTTGA
AA sequence Show only first row Show all	>Lus10018703 pacid=23176228 polypeptide=Lus10018703 locus=Lus10018703.g ID=Lus10018703.BGIv1.0 annot-version=v1.0 MTTSFDRWEKDPFFSAAEEVQESADRMESTYRTWLHAKKDSSTMWDSEELRRDLQTTLGTTKWQLEEFARAVKSSYIDSSTDGARERHRQFIVAMEDHIS RVEASLKESAHSGGNASLSWVSLDEGERNELAAFLSGPAIFRGDNTTKSDGSNKNKEESVSDFSKDSNHSVECGCPEAKEETSYGHRRSASAGANISAWM IPIGEASVKQDFVEADIQRPPRKIPSLSTIVGSIESMPKLKWPKNSVRKWKAMDRCEESDSIPLHSSQLTRSVGSCFEKSKSYLGSCDECYDKPLYGWYG ALQRQFQRSQYQMQYGRPVQSALSIFVLFFFIGEHT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10018703 [exp]	0	1
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10007766 [exp]	2.2	0.8768
AT1G71696		SOL1.4, SOL1.3,...	SUPPRESSOR OF LLP1 1, carboxyp...		Lus10028730 [exp]	12.7	0.8186
AT3G11890			Sterile alpha motif (SAM) doma...		Lus10021086 [exp]	13.3	0.8172
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10008447 [exp]	15.7	0.8056
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Lus10009367 [exp]	15.7	0.8262
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10037882 [exp]	17.3	0.8100
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Lus10009810 [exp]	28.6	0.8198
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10011125 [exp]	53.1	0.7978
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10037332 [exp]	55.2	0.7891
AT2G31130			unknown protein		Lus10033615 [exp]	60.5	0.7934

Compare expression of checked genes

Lus10018703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.