Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24220 526 / 0 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, AWI31, VEP1 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G58750 224 / 1e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032854 [exp] 529 / 0 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018705 [exp] 521 / 0 AT4G24220 590 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000076 [exp] 358 / 8e-124 AT4G24220 394 / 3e-138 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039686 [exp] 273 / 1e-88 AT4G24220 302 / 5e-100 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039689 [exp] 261 / 6e-84 AT4G24220 305 / 4e-101 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039687 [exp] 247 / 2e-78 AT4G24220 271 / 8e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040675 [exp] 219 / 8e-68 AT5G58750 421 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039688 [exp] 94 / 5e-22 AT4G24220 97 / 1e-23 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10027156 [exp] 71 / 2e-14 AT4G24220 79 / 4e-18 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G019600 [exp] 537 / 0 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120600 [exp] 531 / 0 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019700 [exp] 527 / 0 AT4G24220 556 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019300 [exp] 513 / 0 AT4G24220 560 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120700 [exp] 511 / 0 AT4G24220 569 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G134500 [exp] 503 / 6e-179 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019400 [exp] 490 / 8e-174 AT4G24220 544 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019500 [exp] 489 / 2e-173 AT4G24220 541 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030600 [exp] 275 / 1e-89 AT4G24220 271 / 4e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030700 [exp] 274 / 4e-89 AT4G24220 292 / 2e-96 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10018704 pacid=23176166 polypeptide=Lus10018704 locus=Lus10018704.g ID=Lus10018704.BGIv1.0 annot-version=v1.0 ATGAGTTGGTGGTGGGCAGGAGCCATCGGCGTCACCAGGAAGAAATCGGAGATAGATGCGACCGCGCCTCGAAACAATTATCAGAGCGTGGCACTGATCG TCGGAGTCACCGGCATTGTGGGCAACAGCTTGGCCGAAATCCTACCTCTCAGAGACACCCCTGGCGGCCCATGGAAAGTCTACGGCGTTGCCCGTCGACC ACGTACCAATTGGAGCGCCGACCACCGCATGCGCTACATCCAGTGCGACGTCACCGACCAGGTCGACACCAACTACAAGCTCGCCCAACTAAACGACGTC ACCCACATCTTCTACGTCACCTGGGCCCGCTGCTCCACCGATGAAGAGAATTGCAAAGTCAACGGCCTCATGTTCCGCAACGTTCTCCAGGCCGTGATCC CTAACGCTCCAAACCTCCGCCACGTGTGCCTCCAGACGGGCGTCAACCACTACGTCGGATCCGGATCAGGATCCGCATACGACCCGCCCTTCACCGAAGA CCTGCCCCGATTGAGATCCCCAAACTTCTACTACACGTTGGAGGACGTGATGTGGGAGGAGACGGGAAAGAAGGAAGGGAAAGTGACGTGGTCCGTACAC CGGCCGGGCCAGATCTGGGGATTCTCACCCTACAGCTTAATGAACGTGATCGGATCATTATGCGTGTACGCCACCATATGTAAGCACGAAGGATCGCCGT TGGTATTCCCGGGGAACGAGGAGGCCTGGAGCGGTTACTCAGCGGCGTCGGATGCGGATCTGGTGGCGGAGCACCAGATCTGGGCGGCGGTGGATCCCAA CGCCAAAGAGGAGGCGTTCAACGTGATGAACGGCGACGTGTTCAAGTGGAAGCAGCTCTGGAAGGTTCTGGCGGAGCAGTTCGAGGTAGGAATGGGAAGC CGAAGGGGAACAATAAAGCTGGCGGAGATAATGAAGGGGAAAGAAAAAGTGTGGGAGGAGATAGTGAAGAAGCACGATCTTCAGGCGACGAAGCTAGAGG AGGTCGGAAACTGGTGGTATGTGGACGAGGTGTTAGGCGGCGGCGACGGGAGCGGAGGATGGATGATGAGTACCAATAAGAGTAAAGAGCACGGCTTCCT GGGGTTTAGGAATTCCGATCGTTCATTCGTTGCTTGGATTGATAAATTAAAGGCTTGCAGGATTGTCCCTTAA
AA sequence Show only first row Show all	>Lus10018704 pacid=23176166 polypeptide=Lus10018704 locus=Lus10018704.g ID=Lus10018704.BGIv1.0 annot-version=v1.0 MSWWWAGAIGVTRKKSEIDATAPRNNYQSVALIVGVTGIVGNSLAEILPLRDTPGGPWKVYGVARRPRTNWSADHRMRYIQCDVTDQVDTNYKLAQLNDV THIFYVTWARCSTDEENCKVNGLMFRNVLQAVIPNAPNLRHVCLQTGVNHYVGSGSGSAYDPPFTEDLPRLRSPNFYYTLEDVMWEETGKKEGKVTWSVH RPGQIWGFSPYSLMNVIGSLCVYATICKHEGSPLVFPGNEEAWSGYSAASDADLVAEHQIWAAVDPNAKEEAFNVMNGDVFKWKQLWKVLAEQFEVGMGS RRGTIKLAEIMKGKEKVWEEIVKKHDLQATKLEEVGNWWYVDEVLGGGDGSGGWMMSTNKSKEHGFLGFRNSDRSFVAWIDKLKACRIVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018704 [exp]	0	1
					Lus10006099 [exp]	3.0	0.7414
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10032911 [exp]	4.9	0.8156
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	6.2	0.7754
					Lus10032433 [exp]	6.2	0.8111
AT5G35390			Leucine-rich repeat protein ki...		Lus10022946 [exp]	8.1	0.7562
AT2G34930			disease resistance family prot...		Lus10029483 [exp]	10.0	0.7580
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10019762 [exp]	10.2	0.7309
AT2G37470			Histone superfamily protein (....		Lus10006484 [exp]	10.7	0.7096
AT5G65550			UDP-Glycosyltransferase superf...		Lus10043445 [exp]	13.6	0.7614
					Lus10009357 [exp]	16.7	0.7404

Compare expression of checked genes

Lus10018704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.