Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24220 560 / 0 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, AWI31, VEP1 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G58750 229 / 2e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032854 [exp] 663 / 0 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000076 [exp] 562 / 0 AT4G24220 394 / 3e-138 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018704 [exp] 500 / 1e-177 AT4G24220 530 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039686 [exp] 300 / 4e-99 AT4G24220 302 / 5e-100 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039689 [exp] 276 / 1e-89 AT4G24220 305 / 4e-101 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039687 [exp] 256 / 1e-81 AT4G24220 271 / 8e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040675 [exp] 237 / 2e-74 AT5G58750 421 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024788 [exp] 91 / 2e-22 ND 81 / 6e-24 Lus10039688 [exp] 91 / 5e-21 AT4G24220 97 / 1e-23 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G019600 [exp] 582 / 0 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019300 [exp] 580 / 0 AT4G24220 560 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G134500 [exp] 574 / 0 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120600 [exp] 572 / 0 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019700 [exp] 571 / 0 AT4G24220 556 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120700 [exp] 563 / 0 AT4G24220 569 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019400 [exp] 553 / 0 AT4G24220 544 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019500 [exp] 548 / 0 AT4G24220 541 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030600 [exp] 295 / 3e-97 AT4G24220 271 / 4e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030700 [exp] 294 / 9e-97 AT4G24220 292 / 2e-96 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018705 pacid=23176244 polypeptide=Lus10018705 locus=Lus10018705.g ID=Lus10018705.BGIv1.0 annot-version=v1.0 ATGAGCTGGTGGTGGGCTGGCGCCATTGGAGCTGCTAAGAAGAAGCTCGACGAAGACGAGGCTCCCCGTAGCTACCAGAGCGTCGCCCTGGTGGTGGGCG TCACCGGAATCGTAGGCAACAGCCTAGCCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCCTCGCCCACCCCGACACTCCAGGCGGCCCATGGAAGGT ATACGGCGTCGCTCGTCGCCCCCGCCCCAATTGGAACGCCGATCATCCGATCGAGTACATCCAGTGCGACATCTCCGACCCAAACGACACCGAATCAAAG CTCTCTCAGCTCACTGACGTCACCCACATCTTCTACGTGACCTGGAGCAGCCGCCCCACCGAGGCCGAGAATTGCGAGGTTAACGGCCGAATGTTCCGGA ACCTCCTAGACGCCGTCGTCCCGAACTCCCCCAACCTCCAGCACATCTGTCTTCAGACCGGAGCAAAGCACTACGTCGGACCATTCGAATCCCTTGGGAA GATCCAGCCCCACGAACCACCTTTCACTGAGGATTTGCCCAGATTGGATGTGCCCAATTTCTACCACACTTTGGAGGACATCCTGTACGAAGAAGCCGAC AAGAAGGAAGGATTGACGTGGTCCGTACACCGCCCCGATCAGATTTGGGGGTTTTCTCCCTACAGTATGATGAACATGATTGGTACTCTCTGTGTTTACG CCGCGATATGTAAACACGAGGGTTTGCCTCTGATTTTCCCAGGGACCAAAGATGCTTGGAACTGTTACGCCAATTCTTCCGATGCTGATCTGATTGCTGA GCATCAGATATGGGCTTCCGTGGATCCTTACGCAAAGAATGAGGCTTTCAACATTGTGAATGCAGATGTGTTCAAGTGGAAGCATTTGTGGAAAGTTTTG GCTGAACAGTTTGGGATAGAGAATTACGGGTTTGAGGAGGATGTAGAGAAGAGGTTAAGCTTGAAGGAGATGATGAAGGATAAAGGGCCAGTTTGGGAAG AGATTGTGAAGCAGAATCAGCTGGAACCTACGAGGTTGGAGGATGTTGGTAATTGGTGGTTTGTGGATGTTTTGTTTTCTTTGGAGGCTGTACTGTCGAG CATGAACAAGAGCAAAGAGCATGGGTTTTTGGGGTTTAGGAATTCCAAGAACTCTTTCATTTCCTGGATTGATAGGGTGAAGGGTTACAAGATTGTCCCT TGA
AA sequence Show only first row Show all	>Lus10018705 pacid=23176244 polypeptide=Lus10018705 locus=Lus10018705.g ID=Lus10018705.BGIv1.0 annot-version=v1.0 MSWWWAGAIGAAKKKLDEDEAPRSYQSVALVVGVTGIVGNSLAXXXXXXXXXXSLAHPDTPGGPWKVYGVARRPRPNWNADHPIEYIQCDISDPNDTESK LSQLTDVTHIFYVTWSSRPTEAENCEVNGRMFRNLLDAVVPNSPNLQHICLQTGAKHYVGPFESLGKIQPHEPPFTEDLPRLDVPNFYHTLEDILYEEAD KKEGLTWSVHRPDQIWGFSPYSMMNMIGTLCVYAAICKHEGLPLIFPGTKDAWNCYANSSDADLIAEHQIWASVDPYAKNEAFNIVNADVFKWKHLWKVL AEQFGIENYGFEEDVEKRLSLKEMMKDKGPVWEEIVKQNQLEPTRLEDVGNWWFVDVLFSLEAVLSSMNKSKEHGFLGFRNSKNSFISWIDRVKGYKIVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018705 [exp]	0	1
AT5G03990			unknown protein		Lus10016362 [exp]	1.4	0.8944
AT2G01410			NHL domain-containing protein ...		Lus10031811 [exp]	2.0	0.8790
AT1G80180			unknown protein		Lus10014488 [exp]	3.5	0.8613
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	4.9	0.8667
AT3G61180			RING/U-box superfamily protein...		Lus10029582 [exp]	6.0	0.8784
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10039161 [exp]	6.7	0.8247
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	7.0	0.8503
AT4G29010		AIM1	ABNORMAL INFLORESCENCE MERISTE...		Lus10011102 [exp]	7.3	0.8307
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10038893 [exp]	13.3	0.8348
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10013397 [exp]	14.1	0.8615

Compare expression of checked genes

Lus10018705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.