Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43120 508 / 3e-174 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT5G10200 453 / 5e-152 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT3G50030 383 / 2e-126 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT4G30480 48 / 1e-05 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G17970 43 / 0.0007 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT5G65160 42 / 0.001 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024789 [exp] 981 / 0 AT5G43120 533 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10029573 [exp] 440 / 6e-146 AT5G10200 1056 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10006301 [exp] 437 / 1e-145 AT5G10200 1059 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10035117 [exp] 46 / 5e-05 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 44 / 0.0005 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G120800 [exp] 617 / 0 AT5G43120 635 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.007G052300 [exp] 540 / 0 AT5G43120 580 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.005G076300 [exp] 447 / 5e-150 AT5G10200 1113 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.007G092100 [exp] 444 / 8e-149 AT5G10200 1085 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.018G100700 [exp] 47 / 1e-05 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G178900 [exp] 47 / 2e-05 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018706 pacid=23176216 polypeptide=Lus10018706 locus=Lus10018706.g ID=Lus10018706.BGIv1.0 annot-version=v1.0 ATGAGACAGTCCAAGTCCTCATTGTCCAGGAGAAAAAGCTTAGCAAGTTGTTTGAAGGAGATGACACTGAGCGACAGCCACGACAATGTTCGTATCTTGA ATGGTCTGTGGAGCATCGCCATGAACCAGCCGGATGATTCAGAGTTGCCATCACTAGGCCTCTTCAGCTGCATGGCCACTCTGATTCGCCAAAGTGTTCA TAAACACACCAGTGATCATCATTGGCTTATAAATCATGAGCAGAGCATGTGCATCCCTTACTATGCAGCTCATGTCATTGGTTCTTACACCATGAACAAG GTCGAGTACGCACAACTGGCTGTTGAATCGGGTGTGATCCCTCCACTTATGGAGCTCTTTAGAGGCAAGATCAGCTGGGTTGAACAAAGAGTAGCCGTTA GAGCACTTGGACATCTCGCCAGCTACGATCCAACTTTCAAAGCTGTAGCTGTGTTCGAAGAAGAGGTGGTTAAGGTAGCGATGGAGTTGGCTTCCACTGG AATTCATCTGGTGCACCGTGACTTCATCAGAGTGAAGGACAAGACCAAGAGATTGAAGTATCACTGTGATTTGCTGACAAGATCAAAAGCTGAAGAGTGG GCCAGCCAACTACAGTGTTGGTCGCTTCATCTATTGAATTGCTTCGCTTCGAAAGGGCGGTCCATAACTATTAGCCTCATCTGTAGCCAGGTTGGTTTTC TAGAGAGTTTAAGTAGTATGTGGGGGGGAGTAGTGAATCACTCATCTCCAGCTGGTATAGGACTGATTAGAATCTTATGTTACCATAAACCTGGTAGGAA AAAGATTTCTCAATCCAAACAAGTCATACAAAACATCTGCAACATCTCGAGATCGTCGGATGATTGGCAGTACATGGGGATTGATTGTCTTCTGTTACTT CTCAAAGACCAAGAAACTAGGTACAGAGTTCTGGAACTGGCCTCTTCCATTCTTATCGATTTGGTCGAACTTAAAAACATCGGTGAACATAGATCAAACG TGGGTCGAACAATCACAGAAGCTCTCCTTCTAGACTACAAACTGCAGAAAGTGAAGCTAAAGGGTAATAATGCGAATGTGGGAGTTCTTCAGGATTTGCG ACAAGTATGGAGCTTGAAGGTGGATAGAAGGAGAAAGGAGAGAGCGATGTCGGAAGAGAGAGTCGAGGAAAGAAAGGTATTGGCTATGTTGATAAAGCAA CAAGGAAACCACATGTTTCGGGCTGGAGTGATTGAGGAAGCGTTTGTGAAATATAGCGAAGCACTTGAGATTTGTCCATTAAGGTTTAGAAAAGAGAGGA TGGTTGTGTACAGCAACAGAGCTCAGTGTAGTTTGGTTGCTGGCGATTCGGACGGGGCGATCAGCGACTCGACTCGAGCCCTTTCGTTGTCGAGTCGGGG TAACTCGCACGGGAAGAGCCTGTGGAGAAGGTCACAAGGGTATGACATGAAAGGGATGGTTAAGGAGAGCTTGATGGACTGCTTAATGTTCATTAACAAT TGTATCAATGAAAAAAGCAGAGTTCCATATAATGCAGTGCGTTTGATGAGCAAGCAGATGGATGCCACGTGGCTGTTTGCTGATGCTGCTGCCAAAACTG AACTGGAAAAGGATGATGGGATTGGTAATGGAAAGGAGGAAGAGTACAGCAGCATTATCAGCAGCAGCAGTAAGGATATGAAAGATTTGGAAGGATTGAT AATGAGAATGGTGATGGCAAAAAAGGGTATTGATGACATTATTTCAGGACATGTGAATGAAGGGTTATCGACTATAGTGGAAGAGCCATTGGAGGATTTC ATGGGGAAGGAAGGGAGCAGGGGAAAGCTGAGACGGCCAATAAACGCAAAGAAGAAGAAGAAGAAAACGAAGGCTTCATCAGTTCAATCTCACTGTGAAA AAAGCTGA
AA sequence Show only first row Show all	>Lus10018706 pacid=23176216 polypeptide=Lus10018706 locus=Lus10018706.g ID=Lus10018706.BGIv1.0 annot-version=v1.0 MRQSKSSLSRRKSLASCLKEMTLSDSHDNVRILNGLWSIAMNQPDDSELPSLGLFSCMATLIRQSVHKHTSDHHWLINHEQSMCIPYYAAHVIGSYTMNK VEYAQLAVESGVIPPLMELFRGKISWVEQRVAVRALGHLASYDPTFKAVAVFEEEVVKVAMELASTGIHLVHRDFIRVKDKTKRLKYHCDLLTRSKAEEW ASQLQCWSLHLLNCFASKGRSITISLICSQVGFLESLSSMWGGVVNHSSPAGIGLIRILCYHKPGRKKISQSKQVIQNICNISRSSDDWQYMGIDCLLLL LKDQETRYRVLELASSILIDLVELKNIGEHRSNVGRTITEALLLDYKLQKVKLKGNNANVGVLQDLRQVWSLKVDRRRKERAMSEERVEERKVLAMLIKQ QGNHMFRAGVIEEAFVKYSEALEICPLRFRKERMVVYSNRAQCSLVAGDSDGAISDSTRALSLSSRGNSHGKSLWRRSQGYDMKGMVKESLMDCLMFINN CINEKSRVPYNAVRLMSKQMDATWLFADAAAKTELEKDDGIGNGKEEEYSSIISSSSKDMKDLEGLIMRMVMAKKGIDDIISGHVNEGLSTIVEEPLEDF MGKEGSRGKLRRPINAKKKKKKTKASSVQSHCEKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43120			ARM-repeat/Tetratricopeptide r...		Lus10018706 [exp]	0	1
AT3G51560			Disease resistance protein (TI...		Lus10029858 [exp]	11.0	0.6872
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10031139 [exp]	12.4	0.6789
AT5G62840			Phosphoglycerate mutase family...		Lus10030165 [exp]	15.2	0.6530
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10028996 [exp]	15.2	0.6701
					Lus10005025 [exp]	16.3	0.7306
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10014880 [exp]	16.4	0.6608
AT5G48540			receptor-like protein kinase-r...		Lus10014362 [exp]	17.1	0.6478
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10035499 [exp]	18.2	0.7022
					Lus10019558 [exp]	20.2	0.6496
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	21.0	0.6496

Compare expression of checked genes

Lus10018706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.