Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43100 818 / 0 Eukaryotic aspartyl protease family protein (.1) AT3G50050 660 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G22850 177 / 1e-48 Eukaryotic aspartyl protease family protein (.1) AT2G36670 160 / 1e-42 Eukaryotic aspartyl protease family protein (.1.2) AT1G08210 160 / 2e-42 Eukaryotic aspartyl protease family protein (.1) AT5G36260 148 / 2e-38 Eukaryotic aspartyl protease family protein (.1) AT1G05840 145 / 2e-37 Eukaryotic aspartyl protease family protein (.1) AT1G65240 138 / 5e-35 Eukaryotic aspartyl protease family protein (.1) AT3G02740 137 / 2e-34 Eukaryotic aspartyl protease family protein (.1) AT3G18490 134 / 2e-33 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024792 [exp] 1251 / 0 AT5G43100 839 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10019309 [exp] 682 / 0 AT5G43100 712 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10011513 [exp] 677 / 0 AT5G43100 687 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 168 / 4e-45 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 167 / 1e-44 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027732 [exp] 152 / 2e-39 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10014391 [exp] 150 / 5e-39 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 152 / 2e-38 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10027001 [exp] 139 / 3e-35 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G020200 [exp] 902 / 0 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 764 / 0 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 178 / 6e-49 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 177 / 2e-48 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 150 / 4e-39 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G146400 [exp] 144 / 7e-37 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 140 / 2e-35 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.016G096700 [exp] 137 / 3e-34 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.015G051800 [exp] 125 / 1e-30 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G053300 [exp] 123 / 2e-29 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10018709 pacid=23176295 polypeptide=Lus10018709 locus=Lus10018709.g ID=Lus10018709.BGIv1.0 annot-version=v1.0 ATGGCTCGACCATGGTCTTGCCTATCCCTATTTGTCCTGATCACATTCAATTTCTACTGCGTCGTATCTGCGACCTTAGATATCGATAGTCTCCGGACGC CGATGATTATTCCTCTCCACCTCTCCATCCCTAATGTATCTGCTCACCAGAGATCTGACTATAACCGACGTCATCTACAGAATTCAGACCTCCTGCCAAA CGCTCGCATGCGTCTCTATGACGATCTCCTCACCAACGGTTACTACACGACTAGGCTGTATATAGGGTCACCTCCGCAGGAATTCGCTCTTATCGTGGAT ACCGGGAGTACAGTAACCTATGTTCCATGCTCGAGCTGCGAACATTGCGGCAAGCACCAGGATCCAAAGTTCCAACCAGAGTTGTCTAGCACATACCAGG CTGTAACGTGTAACCCCAGTTGTAACTGTGATGACGAAGGAAAGCAATGCACTTATGAGAGACGATATGCAGAGCTGAGTTCCAGCAGCGGTGTGCTTGC TGAAGACGTCATTTCCTTTGGGAATGAAAGTCAGCTCAACCCTCAAAGGGCAGTGTTTGGCTGCGAAAATAGGGAAACTGGTGATCTGTACAGTCAGAGG GCCGATGGCATAATTGGCCTTGGTCGTGGTCGGCTTAGTATCGTGGATCAACTAGTTGAGAAGAAAGTCATAAGTGATTCGTTTTCTTTGTGCTATGGTG GGATGGACGTTGGTGGTGGTGCAATGGTTCTTGGGGGGATCTCTCCTCCTGTTGACATGGTGTTTACACACTCAGATCCTTACCGCAGTCCATATTACAA TATTGAGCTGAAGGGCCTGCGGGTGGCTGGGAAGTCATTGAAATTAAATCCTAAAGTCTTTGATGGCCGGCATGGGACAGTTTTGGACAGTGGAACCACG TATGCTTACCTTCCTGAAGAAGCATTCGTCCCACTCAAGGATGCTATAATGAAGGAAATTAGTTCTCTCAGACAGATTCATGGCCCTGATCCGAATTACA ATGATATTTGTTTTTCTGGCGCTGGAAGGGACGTCTCTGAACTATCAAAAAAGTTTCCAAAGGTGGACATGGTATTCAGCAATGGTCAAGCATTGACATT GTTTCCAGAAAATTACCTTTTCCGACATACAAAAGTTAGTGGTGCATATTGCTTTGGGATTTTCGAGAATGTAAAGGACCCGACCACTCTTTTAGGAGGA ATCATAGTTCGGAATACGCTTGTAACATATGATCGGGAAAATGACAAGATTGGATTTTGGAAGACTAATTGCTCTGAGCTATGGAAGAGAATGCAAGGTC CTGGAGCTCCTGCTCCACCACCTAGCACTTTACACATTAACAATACTAGTAATAGAAGTGATAATGTGCCTCCTGTTCAATCACCAAACGGGCTGCCTTC AAACTACTTTCCAGGTGAATTCAGAATTGCAATTATAACATTTGATATGTTGATTTTGGTCAACGACACTTCCGTGAAGCCCAACCTCACAGAAGTGGCG GATGTCATTGCTCATGAGCTGGAAGTGGACCATTTACAGGTGCACATGCTGAATGCAACTCCAAAAGGGAAAGAATACGAGGTGAAGTGGGCGATATATC CTGCTTCATCAAAAGAATACATTTCTAATAGCACAGCAATGAGTATTCTTGTTCGATTAAAGGAGCATAAATTTCAATTTCCAAAGAGATATGGAAGCTA TCAGCTGGTGGAGTGGAGAACTGAACCTCAAAGAAAGTCGTCATGGTGGGAGCAACATTGGGTGGGAGTGGCAATTGGGGTATTGGCAACGATAGTAGTT GGATTATCGAGTGCTGGTGTGTGGTTGGTGTGGAGGCGAAGACAGCAAAGTTTAGGTACATATGAACCAGTGGGTGGCATGGTTGGGGAGCAAGAACTTC AGCCGTTGTGA
AA sequence Show only first row Show all	>Lus10018709 pacid=23176295 polypeptide=Lus10018709 locus=Lus10018709.g ID=Lus10018709.BGIv1.0 annot-version=v1.0 MARPWSCLSLFVLITFNFYCVVSATLDIDSLRTPMIIPLHLSIPNVSAHQRSDYNRRHLQNSDLLPNARMRLYDDLLTNGYYTTRLYIGSPPQEFALIVD TGSTVTYVPCSSCEHCGKHQDPKFQPELSSTYQAVTCNPSCNCDDEGKQCTYERRYAELSSSSGVLAEDVISFGNESQLNPQRAVFGCENRETGDLYSQR ADGIIGLGRGRLSIVDQLVEKKVISDSFSLCYGGMDVGGGAMVLGGISPPVDMVFTHSDPYRSPYYNIELKGLRVAGKSLKLNPKVFDGRHGTVLDSGTT YAYLPEEAFVPLKDAIMKEISSLRQIHGPDPNYNDICFSGAGRDVSELSKKFPKVDMVFSNGQALTLFPENYLFRHTKVSGAYCFGIFENVKDPTTLLGG IIVRNTLVTYDRENDKIGFWKTNCSELWKRMQGPGAPAPPPSTLHINNTSNRSDNVPPVQSPNGLPSNYFPGEFRIAIITFDMLILVNDTSVKPNLTEVA DVIAHELEVDHLQVHMLNATPKGKEYEVKWAIYPASSKEYISNSTAMSILVRLKEHKFQFPKRYGSYQLVEWRTEPQRKSSWWEQHWVGVAIGVLATIVV GLSSAGVWLVWRRRQQSLGTYEPVGGMVGEQELQPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43100			Eukaryotic aspartyl protease f...		Lus10018709 [exp]	0	1
AT1G29690		CAD1	constitutively activated cell ...		Lus10025235 [exp]	2.2	0.8822
AT3G59350			Protein kinase superfamily pro...		Lus10025498 [exp]	2.4	0.8794
AT5G43100			Eukaryotic aspartyl protease f...		Lus10024792 [exp]	2.4	0.8626
AT4G16380			Heavy metal transport/detoxifi...		Lus10001913 [exp]	3.2	0.8467
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10001021 [exp]	3.5	0.8799
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	5.7	0.8759
AT3G27460		AtSGF29a	SaGa associated Factor 29 a, S...		Lus10014593 [exp]	6.2	0.8254
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	6.7	0.8641
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10019260 [exp]	7.5	0.8560
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10022155 [exp]	8.5	0.8559

Compare expression of checked genes

Lus10018709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.