Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56510 279 / 2e-86 APUM12 pumilio 12 (.1) AT1G22240 273 / 8e-85 APUM8 pumilio 8 (.1) AT1G78160 270 / 3e-82 APUM7 pumilio 7 (.1) AT1G35730 260 / 1e-79 APUM9 pumilio 9 (.1) AT4G08840 252 / 1e-76 APUM11 pumilio 11 (.1) AT1G35750 239 / 9e-72 APUM10 pumilio 10 (.1) AT4G08560 215 / 3e-63 APUM15 pumilio 15 (.1) AT5G43090 212 / 1e-61 APUM13 pumilio 13 (.1) AT5G43110 184 / 3e-51 APUM14 pumilio 14 (.1) AT3G20250 154 / 1e-39 APUM5 pumilio 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024793 [exp] 948 / 0 AT5G56510 283 / 1e-87 pumilio 12 (.1) Lus10036469 [exp] 268 / 5e-83 AT1G78160 441 / 5e-149 pumilio 7 (.1) Lus10041139 [exp] 267 / 1e-81 AT1G78160 437 / 4e-146 pumilio 7 (.1) Lus10037976 [exp] 171 / 5e-45 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10033353 [exp] 165 / 5e-43 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10034808 [exp] 165 / 6e-43 AT3G20250 880 / 0.0 pumilio 5 (.1) Lus10038706 [exp] 162 / 4e-42 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10001567 [exp] 147 / 5e-37 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10000516 [exp] 141 / 7e-37 AT2G29200 638 / 0.0 pumilio 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G120900 [exp] 395 / 2e-132 AT5G56510 278 / 2e-86 pumilio 12 (.1) Potri.014G020300 [exp] 382 / 3e-127 AT5G56510 260 / 1e-79 pumilio 12 (.1) Potri.003G222300 [exp] 303 / 6e-94 AT5G56510 497 / 4e-168 pumilio 12 (.1) Potri.001G002600 [exp] 293 / 4e-90 AT5G56510 525 / 3e-179 pumilio 12 (.1) Potri.002G095400 [exp] 276 / 2e-83 AT1G78160 473 / 8e-158 pumilio 7 (.1) Potri.001G298000 [exp] 250 / 4e-75 AT5G56510 211 / 2e-60 pumilio 12 (.1) Potri.010G225600 [exp] 170 / 8e-45 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G004300 [exp] 160 / 2e-41 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.008G036500 [exp] 159 / 5e-41 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.003G009900 [exp] 157 / 2e-40 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00806 [flax] [poplar] PUF Pumilio-family RNA binding repeat
Representative CDS sequence Show only first row Show all	>Lus10018710 pacid=23176214 polypeptide=Lus10018710 locus=Lus10018710.g ID=Lus10018710.BGIv1.0 annot-version=v1.0 ATGTTTCCCTGGCCAAATGGGTTTTACCAAGATCATAACGGCGCCGCCGAAGACCGCCACCAGCAACAGCAGCAGCCCTCTTTCCCTCCCGCCGTCAATA CTGATCAACCCTATCCCCTCCCGTCCCTCGCCGCCGATTTCCCCTACAATAATCACCACCCGCAGCAGGAGTCTCTTGAATCTTTGTTTTATTCCCTCAA CCTCTCGGACCGCCGTGGCTTGAATGGGTTCGTCGCGAATAAGGCCGCCATCGAGGGCAGCGGAGGATTTCTTCCTGGCCCGCCAGGTAATCACTCTTCT GTTGGCTGGTTCCCCAATTACGATGATCATCGGATTTTCAATCAGGGTTCGAGGGCTCGTGATTATCAGACCAATGCAGCTCCCTCCACCGGAGGCGGCT TCGGCGGCGTTGGTGACTACTATCTTCGTCGTCTGCTTGCCTTGCGTGCCGAAGCTGATCCAAGGTTATGGGACGGAAACTTCTCTTACAAGGACCCTGT ACCGACCCTCAATAGGATTTCGTCGGATTCTCAGGCGAGAAGCAGCGCCAATCCAAGAAGGTCTTCTTCCAATTTTCCCAACAGCAGGCGCTCTTCTAAT AGTAATCATCCTCCTACTTCCACCAATAATAATAATAATCTCAACGTTAGTAGGAGGTCTGATTCTATATACGAGGCGTCAAACTCTCTGGATTCCTTCA AGGGACAGATTCTTTCAATGGCTCAGGATCAACATGGATGTAGGAGCTTGCAAAGGGTGATTGGGACCAAGAAAGTTGAGGAAATTGAGCATGTCTTCTT GGAGTTGAAAGATCATGTGGGTCAGCTCATGCTGGACCAGTTCGGCAACTACGTCGTACAGAAGCTCCTCGATGTCTGTTCTGATGAACAGAGGACTGCA ATCCTCAGAATATTGACCAAGAATGAAAGTCAGCTCCTCAGAATTTGTCTCAACCCTCATGGGACTCGTGCTATACAGAAGTTGTTGGATCATGTCACTA CTTCACATCAAGTCTCTATTATAATGCCAAGTCTTAGCCGAGCTGCTCTTTCATTGACTAAGGACATGAACGGCCATCATGTTATCCAGCATTGCTTGAA GAGTTTCTCCCATGACGATAACAAGTACCTTCTGAACATGGTGGCAGACAACTGCTTTGAGATTGCCACAGACAAAAGTGGATGCTGTGTGCTTCAGATC TGTGTTGAATACTCTCGAGGAGAGACCAGAGATCGCCTTGTCTCTGAGATCATTGGGAATGCACTGCACTTGTCGCAAGACTGCTACGGCAACTACGTAG TACAGAACATAGTGGGGTTGAAGGTTGAGAAAATCAACGCAGCTCTTCTCGCACAACTTCAAGGGGACTTGGTGAATCTCTCGTGCAACAAGTACGGTAG TAATGTGGTGGAGAAGTGCTTGACTGAGACAACAGAAGAGCAATCTACACAAGTTATGATGGAGTTGCTTAGTAGTCCCAAGTCTTCTTTGATGCTTGTT GATCCCTTTGGTAACTTTGTCATCCAAACAGCACTCCGCATTTCTCAGTCGGGTCGGAATCCAATGGTGCGGTCGGCCCTGGTGGATCTGGTTGAAAGGA ACGCTCCGATGATGAGGAGCAACATCTATGGAAAGAAGGTGCTCTCTGCTTGGTTTGGAAAGAGGCAATGGCCATACATGTAG
AA sequence Show only first row Show all	>Lus10018710 pacid=23176214 polypeptide=Lus10018710 locus=Lus10018710.g ID=Lus10018710.BGIv1.0 annot-version=v1.0 MFPWPNGFYQDHNGAAEDRHQQQQQPSFPPAVNTDQPYPLPSLAADFPYNNHHPQQESLESLFYSLNLSDRRGLNGFVANKAAIEGSGGFLPGPPGNHSS VGWFPNYDDHRIFNQGSRARDYQTNAAPSTGGGFGGVGDYYLRRLLALRAEADPRLWDGNFSYKDPVPTLNRISSDSQARSSANPRRSSSNFPNSRRSSN SNHPPTSTNNNNNLNVSRRSDSIYEASNSLDSFKGQILSMAQDQHGCRSLQRVIGTKKVEEIEHVFLELKDHVGQLMLDQFGNYVVQKLLDVCSDEQRTA ILRILTKNESQLLRICLNPHGTRAIQKLLDHVTTSHQVSIIMPSLSRAALSLTKDMNGHHVIQHCLKSFSHDDNKYLLNMVADNCFEIATDKSGCCVLQI CVEYSRGETRDRLVSEIIGNALHLSQDCYGNYVVQNIVGLKVEKINAALLAQLQGDLVNLSCNKYGSNVVEKCLTETTEEQSTQVMMELLSSPKSSLMLV DPFGNFVIQTALRISQSGRNPMVRSALVDLVERNAPMMRSNIYGKKVLSAWFGKRQWPYM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56510		APUM12	pumilio 12 (.1)		Lus10018710 [exp]	0	1
AT1G11120			unknown protein		Lus10011221 [exp]	9.6	0.7149
AT5G14230			unknown protein		Lus10022339 [exp]	9.8	0.7051
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	13.7	0.7346
AT1G78230			Outer arm dynein light chain 1...		Lus10033444 [exp]	17.0	0.6801
AT5G14230			unknown protein		Lus10041588 [exp]	18.5	0.6663
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008936 [exp]	27.0	0.6752
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10033665 [exp]	32.4	0.6257
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10028210 [exp]	50.5	0.6147
AT4G33230			Plant invertase/pectin methyle...		Lus10005678 [exp]	55.0	0.6345
AT1G12040		LRX1	leucine-rich repeat/extensin 1...		Lus10040566 [exp]	61.9	0.6254

Compare expression of checked genes

Lus10018710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.