Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37370 404 / 1e-136 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37340 397 / 5e-134 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37320 393 / 3e-132 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37330 390 / 2e-131 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT3G28740 382 / 5e-128 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1) AT4G37400 382 / 9e-128 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT5G36220 379 / 8e-127 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT4G37360 372 / 7e-124 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37430 369 / 8e-123 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT2G23220 365 / 4e-121 CYP81D6 "cytochrome P450, family 81, subfamily D, polypeptide 6", cytochrome P450, family 81, subfamily D, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024819 [exp] 418 / 8e-142 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10020437 [exp] 416 / 2e-141 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10018717 [exp] 414 / 3e-140 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024818 [exp] 409 / 3e-138 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10011958 [exp] 393 / 4e-132 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10024816 [exp] 393 / 7e-132 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10027614 [exp] 390 / 9e-132 AT4G37370 496 / 6e-174 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024820 [exp] 384 / 2e-128 AT5G36220 493 / 2e-171 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10041643 [exp] 351 / 2e-115 AT4G37320 433 / 6e-148 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G020600 [exp] 539 / 0 AT4G37370 479 / 4e-166 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020500 [exp] 534 / 0 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121100 [exp] 522 / 0 AT4G37370 429 / 2e-146 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020432 [exp] 510 / 3e-178 AT4G37370 440 / 4e-151 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121400 [exp] 494 / 4e-172 AT4G37370 470 / 1e-162 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121200 [exp] 487 / 5e-169 AT4G37340 465 / 1e-160 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) Potri.014G021800 [exp] 409 / 2e-138 AT4G37360 458 / 1e-157 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) Potri.003G008200 [exp] 406 / 2e-137 AT4G37370 531 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G144000 [exp] 402 / 7e-136 AT5G36220 496 / 6e-173 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Potri.008G205200 [exp] 401 / 2e-135 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10018711 pacid=23176241 polypeptide=Lus10018711 locus=Lus10018711.g ID=Lus10018711.BGIv1.0 annot-version=v1.0 ATGGCAGCAATCTCATTCATCTTCTTCTACTTCCCCTTATTCCTAGCTACGTACACAATCTTCCACCACTTCAAAAACAAGCTCCACAACAACCTCCCGC CATCTCCATTTCCTTCGCTCCCAATCATCGGCCACCTCCACCTCCTCCGCCGTCCCCTTCACCGTTCCCTCTCCCAAATCTCAGCCAAACACGGCCCGTT AGTCCTCCTCCGGTTCGGCATCCGTAACGTCCTCCTCGTATCCTCCCCTGCTCTTGCCCAAGACTGCTTCACCAAAAACGACGTCGTATTCGCCAACAGG CCCCGTATGGCCGCCGGCCGCCGCCTCGCCTACAACTGCACAACCCTCGCGTGGGCCCCTTACGGAGACCACTGGCGTAACCTCCGCAGAATCGCTTCCA CCCAGCTCCTATCTTCCCACCGTGTCCAATCCCTCTCCGGGATTCGCACCAACGAGGTGAAGTCGATGATCCGGTGGCTGTTGGGGAAAAGCGAGGAGGA GGTGGACATGAAGGTGGTGCTGTTCGAGCTGGCTCTGAACGTTATGATGAGCATGATCGCCGGGAAGAGGTACTACGGCGATAATGTATCGGACGTGGAG GAGGCGCGACGGTTTCGACAGAATCAAACAGAGTCGATGGGGCTGAGTGGGGAGACTAATTTGGAAGACTTTTTGCCGTTGGTGAGATCGAAAGACTTGG AGAGGAGGATGAGAGAATGCCATAAGAAGAGAAATGAGTTTTTCCAGGAATTAATTGAAGAATGGAGGAAGAAGGAGGAGAGTGATGATCTGAACAAGAA ATGTCTCATCCAGGTTCTGCTCTCTTCACAACTCACCGACCCTGACTACTACACCGACGAGCTTATCAAAGGCATGATCATGGTATTGTTATCTGCGGGA ACAGAAACATCGTCAAACACAGTGGAATGGGCGCTGTCCCTGCTCCTAAACCATCCTCAGAAACTGAGAGCTGCTCAATTCGAGATAGATACATTGGTCG GGACGGATCGGTTAGTCGAGGAGACGGACATTGGGAAACTACATTACCTCGAGGGGATCATAAAGGAGACAATGAGAATGTACCCGGCGCTGCCGCTGCT AGTTCCTCACGAATCATCAGAGCGATGTGTGGTTGGAGGATACGAAGTTCCCAGTGGCACCATTCTGTTGGTCAACACTTGGGCTATCCATAACGACAAC AGGATTTGGGATGATCCTTTCGAGTTCAAACCAGAGAGGTTTGTGGAGGTACAAGGCAGAGGAGACAATGATGCTGATGATGATGATGGTGTGTTCAAGT TTTTGGCATTTGGGTATGGGAGAAGGAGTTGTCCAGGAGAAGGATTGGGGATGAAAATGGTGAGCTTGACTTTGGCTACGTTGATACAGTGCTTTGACTG GGAGATACCAGGGAATAATGGAGTGTCGTTGGTGGATATGAGTGAGCAAACTGGTTTCACCATGGCTAAGTCTCTGCCTCTCAATGTTAAGCCTCGTCCT CGCGATGCCATGTTGAACTTGCTTTCCCAAATTTGA
AA sequence Show only first row Show all	>Lus10018711 pacid=23176241 polypeptide=Lus10018711 locus=Lus10018711.g ID=Lus10018711.BGIv1.0 annot-version=v1.0 MAAISFIFFYFPLFLATYTIFHHFKNKLHNNLPPSPFPSLPIIGHLHLLRRPLHRSLSQISAKHGPLVLLRFGIRNVLLVSSPALAQDCFTKNDVVFANR PRMAAGRRLAYNCTTLAWAPYGDHWRNLRRIASTQLLSSHRVQSLSGIRTNEVKSMIRWLLGKSEEEVDMKVVLFELALNVMMSMIAGKRYYGDNVSDVE EARRFRQNQTESMGLSGETNLEDFLPLVRSKDLERRMRECHKKRNEFFQELIEEWRKKEESDDLNKKCLIQVLLSSQLTDPDYYTDELIKGMIMVLLSAG TETSSNTVEWALSLLLNHPQKLRAAQFEIDTLVGTDRLVEETDIGKLHYLEGIIKETMRMYPALPLLVPHESSERCVVGGYEVPSGTILLVNTWAIHNDN RIWDDPFEFKPERFVEVQGRGDNDADDDDGVFKFLAFGYGRRSCPGEGLGMKMVSLTLATLIQCFDWEIPGNNGVSLVDMSEQTGFTMAKSLPLNVKPRP RDAMLNLLSQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10018711 [exp]	0	1
AT2G19460			Protein of unknown function (D...		Lus10006019 [exp]	3.0	0.8079
AT1G27040			Major facilitator superfamily ...		Lus10032876 [exp]	3.5	0.7960
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034666 [exp]	6.0	0.8271
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	16.4	0.8071
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10003754 [exp]	18.5	0.7681
					Lus10042813 [exp]	20.0	0.8128
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011557 [exp]	20.1	0.7760
AT3G48180			unknown protein		Lus10030823 [exp]	21.9	0.7295
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017866 [exp]	22.9	0.7873
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10003642 [exp]	23.7	0.8007

Compare expression of checked genes

Lus10018711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.