Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47230 422 / 4e-147 CYCA3;4 CYCLIN A3;4 (.1.2) AT5G43080 420 / 1e-146 CYCA3;1 Cyclin A3;1 (.1) AT1G47210 418 / 1e-145 CYCA3;2 cyclin-dependent protein kinase 3;2 (.1.2) AT1G47220 366 / 1e-125 CYCA3;3 Cyclin A3;3 (.1) AT1G80370 305 / 7e-100 CYCA2;4 Cyclin A2;4 (.1) AT5G11300 300 / 2e-98 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) AT1G15570 299 / 1e-97 CYCA2;3 CYCLIN A2;3 (.1) AT1G44110 298 / 4e-97 CYCA1;1 Cyclin A1;1 (.1) AT5G25380 286 / 5e-93 CYCA2;1 cyclin a2;1 (.1) AT1G77390 274 / 4e-88 TAM, DYP, CYCA1;2 TARDY ASYNCHRONOUS MEIOSIS, CYCLIN A1;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024822 [exp] 714 / 0 AT1G47230 452 / 5e-159 CYCLIN A3;4 (.1.2) Lus10029700 [exp] 298 / 1e-97 AT1G44110 544 / 0.0 Cyclin A1;1 (.1) Lus10008103 [exp] 296 / 5e-96 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Lus10028544 [exp] 291 / 6e-95 AT1G44110 476 / 4e-167 Cyclin A1;1 (.1) Lus10042739 [exp] 291 / 2e-93 AT1G44110 508 / 1e-177 Cyclin A1;1 (.1) Lus10013886 [exp] 284 / 4e-93 AT5G43080 283 / 2e-93 Cyclin A3;1 (.1) Lus10014199 [exp] 279 / 1e-90 AT1G44110 451 / 2e-157 Cyclin A1;1 (.1) Lus10026598 [exp] 250 / 2e-81 AT5G43080 243 / 9e-80 Cyclin A3;1 (.1) Lus10013140 [exp] 164 / 1e-47 AT5G25380 244 / 1e-78 cyclin a2;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G121500 [exp] 475 / 3e-168 AT1G47230 472 / 1e-167 CYCLIN A3;4 (.1.2) Potri.014G021100 [exp] 469 / 8e-166 AT1G47230 484 / 2e-172 CYCLIN A3;4 (.1.2) Potri.009G093100 [exp] 345 / 3e-116 AT5G43080 288 / 9e-95 Cyclin A3;1 (.1) Potri.018G034100 [exp] 307 / 2e-100 AT5G11300 498 / 1e-174 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.001G177100 [exp] 302 / 1e-98 AT1G80370 483 / 2e-168 Cyclin A2;4 (.1) Potri.002G080000 [exp] 303 / 2e-98 AT1G44110 593 / 0.0 Cyclin A1;1 (.1) Potri.006G247200 [exp] 301 / 4e-98 AT5G11300 494 / 3e-173 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.005G181400 [exp] 297 / 3e-96 AT1G44110 589 / 0.0 Cyclin A1;1 (.1) Potri.003G058200 [exp] 292 / 2e-94 AT1G80370 494 / 9e-173 Cyclin A2;4 (.1) Potri.016G033000 [exp] 174 / 9e-50 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018715 pacid=23176191 polypeptide=Lus10018715 locus=Lus10018715.g ID=Lus10018715.BGIv1.0 annot-version=v1.0 ATGGCTGATCAAGAGAACTGTTCCCGCCTCACTCGTGCTGCCAGGAAGAGAGCAGCTGCGACGATGAACCTTGCTGATGAGGACTGCTCTCCTTTACAGC AGCAGCAGCAGCAGAAGAGGAGCAGGGTTGTTTTAGGGGAACTCCCTCAGTTGTCTAATGCCGGCCCTGTTTTGGTGGATCTGACGTCCGGTGGCCGCCC TGATAAGCGGAAGGCCAAAGGGAACCCTAAGTCTAAGCGCAAGTCCAAGGCCAAGAAAGTGGTTAAGCCCGAGAAAGAAGAGCTTCCGACGCCGGAACTG ATCCCTCCGATTGTCGACGCCGGGAATGAAGATAGAGATGGTTCGGCTGACGATCCTCAGATGTGCACCCAGTATGTCTCCGATATTTACGAGTATCTAC ACAGACTAGAGGCGGAACCAAAGAGAAGGCCTTTGCCTGACTATATTGAGACGGTCCAATCTGAAATCACTCCCAACATGAGAGGGATTCTGGTGGATTG GTTGGTGGAGGTTGCCGACGAATACAAGCTCGTCTCCGATACTCTGTATCTCTCCATCACTTACATTGACAGATTCCTATCTCTGAATCTCACCAATAAA CAACGTCTTCAGCTTATTGGTGTTTCTTCAATGCTCATTGCCTCGAAATACGAGGAAATAACCCCGCCAAATGTGGATGATTTTTGCTACATCACGGATA ATACTTACACCAAAGACGAGGTGGTGAAGATGGAAGCTGATATATTGAAGCACTTGAAATTTGAGTTGGGTACTCCCACAATTAAGACATTCTTGAGGAA AATCAATAGGGTTGCTCAGGAGGATTACAAAAGCGAGAACTTGCAGCTTGAGTTCATGGGTTGCTACCTAGCTGAGTTAAGCTTGCTGGATTACAACTGT GTGAAGTTCTTACCTTCTATGGTTGCTGCATCTGTTGTGTTTCTATCAAGATTCATAATCAATCCGAAGATGCACCCCTGGAATTCCAGCTTAAAGAAGT ACTCTGGATACGCTCCAGCAGAGTTGAAGGAAAGTGTGCTGATCTTACATGACCTCTATCTGAGTCGGAGAGGAGGTGGATTGCAATCAGTTCGTGACAA GTATAAACAGCACAAGTTCAAGTGTGTTGCCGTTGTGGCATCACCACCAGAAATACCTGCTTCATTTTTCCAAGACATTGAACCGAAGTTGAAGGAGCCT CAATTCATTGAAGTGATTGATATTGAAGATTGA
AA sequence Show only first row Show all	>Lus10018715 pacid=23176191 polypeptide=Lus10018715 locus=Lus10018715.g ID=Lus10018715.BGIv1.0 annot-version=v1.0 MADQENCSRLTRAARKRAAATMNLADEDCSPLQQQQQQKRSRVVLGELPQLSNAGPVLVDLTSGGRPDKRKAKGNPKSKRKSKAKKVVKPEKEELPTPEL IPPIVDAGNEDRDGSADDPQMCTQYVSDIYEYLHRLEAEPKRRPLPDYIETVQSEITPNMRGILVDWLVEVADEYKLVSDTLYLSITYIDRFLSLNLTNK QRLQLIGVSSMLIASKYEEITPPNVDDFCYITDNTYTKDEVVKMEADILKHLKFELGTPTIKTFLRKINRVAQEDYKSENLQLEFMGCYLAELSLLDYNC VKFLPSMVAASVVFLSRFIINPKMHPWNSSLKKYSGYAPAELKESVLILHDLYLSRRGGGLQSVRDKYKQHKFKCVAVVASPPEIPASFFQDIEPKLKEP QFIEVIDIED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10018715 [exp]	0	1
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10009446 [exp]	1.0	0.9753
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	2.8	0.9722
AT2G36200			P-loop containing nucleoside t...		Lus10014216 [exp]	4.2	0.9670
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	5.9	0.9632
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	6.0	0.9638
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10025718 [exp]	6.5	0.9599
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10043134 [exp]	9.5	0.9559
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009683 [exp]	10.6	0.9502
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10026954 [exp]	10.8	0.9519
AT1G35530			DEAD/DEAH box RNA helicase fam...		Lus10009444 [exp]	11.0	0.9443

Compare expression of checked genes

Lus10018715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.