Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024821 [exp] 56 / 5e-10 ND 44 / 2e-05
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018716 pacid=23176206 polypeptide=Lus10018716 locus=Lus10018716.g ID=Lus10018716.BGIv1.0 annot-version=v1.0 ATGGGATGCGGCAATGACAATGACTCTAATGACAAAGGACTGTTTTCGCACCTAGGTGCATTTGCTGCTGGTTCACATTATCCGCAGCATGGAGGAGTAT ATCCTCCCCCCAGCGGATATCCTCCTCAACATGGATATTCACCTGCTTCCCATGGATATCCTCCGGCCGGTGGATACCCTCCAGCAGGTTATCCCCCTCC CGGTGGATATCCTGCTCCACCTCCTCCTCACGGATTTCCTAGCCATGGACATGGTGGTTATCCTCCTGCGGGTTATCCTGGTCCTTCCAATCATTCTGGG CATGGAGTCGGTATGGGGGCGTTGTTTGCAGGAGGAGCAGCTGCTGCAGCTGCAGCCTACGGGACTCATCACATTTCTCATGGTGCTCACGGTTATGGTC ATGGAGGCCCCGGTCATGGGTTTGGTCATGGAGGGTTTGGTCATGGCAAGTTCAAGCATGGAAAGTTTGGAAAGCATGGGATGTTTGGAAAGCACAAGGG CGGCAAACACTTCAAGAGATGGAAGTAA
AA sequence Show only first row Show all	>Lus10018716 pacid=23176206 polypeptide=Lus10018716 locus=Lus10018716.g ID=Lus10018716.BGIv1.0 annot-version=v1.0 MGCGNDNDSNDKGLFSHLGAFAAGSHYPQHGGVYPPPSGYPPQHGYSPASHGYPPAGGYPPAGYPPPGGYPAPPPPHGFPSHGHGGYPPAGYPGPSNHSG HGVGMGALFAGGAAAAAAAYGTHHISHGAHGYGHGGPGHGFGHGGFGHGKFKHGKFGKHGMFGKHKGGKHFKRWK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018716 [exp]	0	1
AT5G48140			Pectin lyase-like superfamily ...		Lus10039154 [exp]	2.0	0.8318
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10011244 [exp]	2.4	0.9039
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10034393 [exp]	3.7	0.8495
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10015705 [exp]	4.2	0.8342
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10029205 [exp]	6.9	0.7842
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10028262 [exp]	11.2	0.8154
AT5G42120			Concanavalin A-like lectin pro...		Lus10042795 [exp]	14.7	0.7478
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10031748 [exp]	18.7	0.7474
AT4G05400			copper ion binding (.1.2)		Lus10031070 [exp]	32.9	0.6986
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	33.0	0.7521

Compare expression of checked genes

Lus10018716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.