Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37370 527 / 0 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37330 527 / 0 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37340 508 / 5e-177 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37320 505 / 4e-176 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37360 502 / 7e-175 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT2G23190 482 / 1e-166 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1) AT5G36220 481 / 2e-166 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT4G37430 474 / 5e-164 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT3G28740 469 / 9e-162 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1) AT5G67310 467 / 6e-161 CYP81G1 "cytochrome P450, family 81, subfamily G, polypeptide 1", cytochrome P450, family 81, subfamily G, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024816 [exp] 630 / 0 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10020437 [exp] 551 / 0 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10010373 [exp] 512 / 2e-179 AT4G37370 375 / 3e-126 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024819 [exp] 497 / 1e-172 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024820 [exp] 479 / 1e-165 AT5G36220 493 / 2e-171 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10024818 [exp] 478 / 3e-165 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10011958 [exp] 476 / 2e-164 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10018711 [exp] 440 / 3e-150 AT4G37370 441 / 5e-151 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10041643 [exp] 433 / 2e-147 AT4G37320 433 / 6e-148 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006000 [exp] 522 / 0 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121400 [exp] 521 / 0 AT4G37370 470 / 1e-162 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121200 [exp] 517 / 1e-180 AT4G37340 465 / 1e-160 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) Potri.003G007000 [exp] 516 / 2e-180 AT4G37370 525 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G008200 [exp] 514 / 2e-179 AT4G37370 531 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007900 [exp] 508 / 4e-177 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020500 [exp] 504 / 7e-176 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G021800 [exp] 502 / 1e-174 AT4G37360 458 / 1e-157 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) Potri.005G143800 [exp] 493 / 3e-171 AT4G37370 539 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G144000 [exp] 487 / 5e-169 AT5G36220 496 / 6e-173 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10018717 pacid=23176168 polypeptide=Lus10018717 locus=Lus10018717.g ID=Lus10018717.BGIv1.0 annot-version=v1.0 ATGGAAGCACTAATGGCTTACTACCTCTTGGTACCCACAACGATCATCTTGGTCCTCGTGCTCTCGAAGATCCTAACCATTTCCAACAAACAGCGTCGTT GCGCCACCAATCTCCCTCCTAGCCCACCTTCACTTCCGTTCATCGGCCATCTCCATCTCCTCAAAGAACCCATCCACCGAACCTTGGAAACCCTCTCAAA ACAATACGGACCAATTTACTTCCTCTTCATGGGCGTTCAAAACGTCGTCGTAGTATCATCCCCGTCCTTAGCCGAGGAATGTTTCAGTAAAAACGACGTC ATTTTTGCCGACCGCCCCAAATTTGTTGCCGGTAAAATCCTCCACTACGACTACACCACCTTAGGAGCTGCGCCGTACGGCCCACACTGGCGCGACCTGC GCCGACTGACCTCCGTAGAGCTCCCCTCCACCGCCCGCCTTAATTCCTCCGTCCACATCCGTCGGGACGAGGTCAGGCTCCTGATTCGAAACCTTTGTAA CATGGTTTCGGACGGGTCATCATCAGGTAAATTGGTGGAGATGAAGACGAGGTTGTCGGGTCTGTCGATGAATATAGTGATGAGGATGGTGGCCGGGAAA CGATATTTCGGGACTGGGGAAGTTGAGAATGAAGGGAAGAGGTTTCAAGATGTGATAAGGGAAGTGTTTGAGCTGAGCGGTGCGTCGAATCCTGCGGATT TTTTACCGGTGTTGAGGTGGGTTGTTGATTTTAAGGGAATGGAGAAAAGGATGTGGAGTGTTCTGGCCAAGTTCGATGGGTTTTTCCAGGGCTTGATTGA TGAACGTCGGGATTCTGCTAAAAGAAACAGGGGAGATTCGACGGGGAAGACGATGATTGATAGTTTTCTCAAGTTGCAGGAATCTGATCCTGAAACCTAT TCAGATGATATTATCAAAGGCCAGGTCATGACAATGATTACAGCAGGGACAGACACATCGGCGGCAACAATGGAATGGGCGATGTCACTCTTACTCAACA ACCCTGAAATCCTCAACAAGGCAAGAGCCGAGCTAGACAACATCGTGGGTAACAATCGCCTCGTGGACGAATCTGATTACCCTAATCTTCCATACCTTCA ATCCATCATCTCCGAGACTCTTCGACTGTATCCAGCAGCACCGCTCTTAGTTCCGCACCACTCTTCAGAGGACTGCATCGTCGGAGGCTATCACATTCCC AAAGGCACAATGTTGATGGCTAACGCTTGGGCTATTCACAGGGACCCTAATGTCTGGGAGGATCCGACTACCTTTCGACCCGAGAGACATGATGAACGAG TAGGGGTGGCGGCTGATGCTTATAAATTGATACCGTTTGGGATGGGAAGAAGGGCATGCCCTGGCGCTGGACTTGCGAACCGTGTTGTTAGCTTGGCGTT GGGTGCGTTGATTCAATGCTTTGAATGGGAAAGGGTTGGTGAAGAGTTGCTAGACATGTCTGAAGGTCAAGGGCTTACTATGCCTAAGGTCAAGGCCTTG GAAGCTTTCTGTAAAGCTCGAGAGTGTATGGTAGATGTTTTGGAAACTATATGA
AA sequence Show only first row Show all	>Lus10018717 pacid=23176168 polypeptide=Lus10018717 locus=Lus10018717.g ID=Lus10018717.BGIv1.0 annot-version=v1.0 MEALMAYYLLVPTTIILVLVLSKILTISNKQRRCATNLPPSPPSLPFIGHLHLLKEPIHRTLETLSKQYGPIYFLFMGVQNVVVVSSPSLAEECFSKNDV IFADRPKFVAGKILHYDYTTLGAAPYGPHWRDLRRLTSVELPSTARLNSSVHIRRDEVRLLIRNLCNMVSDGSSSGKLVEMKTRLSGLSMNIVMRMVAGK RYFGTGEVENEGKRFQDVIREVFELSGASNPADFLPVLRWVVDFKGMEKRMWSVLAKFDGFFQGLIDERRDSAKRNRGDSTGKTMIDSFLKLQESDPETY SDDIIKGQVMTMITAGTDTSAATMEWAMSLLLNNPEILNKARAELDNIVGNNRLVDESDYPNLPYLQSIISETLRLYPAAPLLVPHHSSEDCIVGGYHIP KGTMLMANAWAIHRDPNVWEDPTTFRPERHDERVGVAADAYKLIPFGMGRRACPGAGLANRVVSLALGALIQCFEWERVGEELLDMSEGQGLTMPKVKAL EAFCKARECMVDVLETI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10018717 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	1.7	0.9932
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	4.2	0.9916
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10036953 [exp]	4.7	0.9883
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10013205 [exp]	5.5	0.9909
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010694 [exp]	5.9	0.9895
AT2G42560			late embryogenesis abundant do...		Lus10002197 [exp]	6.7	0.9889
					Lus10026293 [exp]	6.9	0.9903
AT5G01150			Protein of unknown function (D...		Lus10003168 [exp]	7.1	0.9902
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10013874 [exp]	7.2	0.9875
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10029878 [exp]	8.5	0.9900

Compare expression of checked genes

Lus10018717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.