Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 183 / 1e-51 ARA12 Subtilase family protein (.1) AT3G14240 180 / 2e-50 Subtilase family protein (.1) AT4G34980 180 / 2e-50 SLP2 subtilisin-like serine protease 2 (.1) AT5G67090 179 / 2e-50 Subtilisin-like serine endopeptidase family protein (.1) AT5G51750 177 / 1e-49 ATSBT1.3 subtilase 1.3 (.1) AT2G05920 176 / 7e-49 Subtilase family protein (.1) AT2G04160 169 / 1e-46 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 162 / 6e-44 ATSBT5.4 Subtilase family protein (.1) AT1G04110 160 / 2e-43 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT3G14067 159 / 6e-43 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024815 [exp] 483 / 3e-166 AT5G67090 543 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009365 [exp] 231 / 5e-69 AT5G67090 637 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10042644 [exp] 218 / 9e-66 AT5G67090 413 / 5e-136 Subtilisin-like serine endopeptidase family protein (.1) Lus10001130 [exp] 215 / 3e-63 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009748 [exp] 215 / 3e-63 AT5G67090 601 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10034496 [exp] 186 / 1e-54 AT4G34980 670 / 0.0 subtilisin-like serine protease 2 (.1) Lus10036546 [exp] 186 / 1e-52 AT1G01900 822 / 0.0 subtilase family protein (.1) Lus10041382 [exp] 186 / 2e-52 AT1G01900 825 / 0.0 subtilase family protein (.1) Lus10013187 [exp] 181 / 9e-51 AT3G14240 1175 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G124500 [exp] 265 / 8e-82 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026500 [exp] 259 / 1e-79 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026700 [exp] 256 / 1e-78 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.007G045100 [exp] 252 / 4e-77 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026600 [exp] 199 / 1e-57 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.009G100500 [exp] 196 / 5e-56 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G074600 [exp] 189 / 6e-54 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.004G173900 [exp] 187 / 6e-53 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.009G133400 [exp] 185 / 3e-52 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.012G131500 [exp] 184 / 5e-52 AT5G51750 1102 / 0.0 subtilase 1.3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10018720 pacid=23176233 polypeptide=Lus10018720 locus=Lus10018720.g ID=Lus10018720.BGIv1.0 annot-version=v1.0 ATGGAGGGTTACAGCAGTAAAGTGAAAATGCAGCAGCAGTACTACTCTAGTCCTTGCCTGTTTTTCATCGGTTGCTTTCTTCTCTCAACAACTCTCCATG CTACTTCAAAGCCAATAGCTAACGAATTATCCACCTACATTGTTCATCTTGATCCTTCCTTCCGTCCAAAGATGTTCACTACCCATTCACAATGGCATTC CTCAATCATCTCCTCTGTCAAAACTTCAACTAACAACCCCCACAACTCTCATTTCCTGTATTCCTACCACAATGCTCTTCATGGGTTTAGTGCCGTTTTG TCCCGACTTGAACTTCAAACTCTTGAAGACCTTCCAGGTTCCCTGGTCTTAGCTTCCTGGACTCCCAACTATTTTACAGCTGTAGTTGGCCAAAACATAT TACTATCCGGTGAGTTGTTCAATCTGATTTCTGGAACATCAATGGCATGCCCTCATGCTTCCGGCGTAGCAGCACTTCTGAAAGGCGCACATCCAGAATG GAGCCATGCGGCTATACGGTCAGCCATGATGACCACTGCAACTACTCTAGACAATACCAGAAAACCAATCAAAGACGAGGGCCAAAATCTGACTGATGCA TCTCCTTTGGCAATGGGAGCAGGCCACATCATGCCGAATAAGGCACTAGACCCTGGTCTAATCGATGATGCCACCCCACAAAATTACGTCTCTCTGCTAT GTTCCTTGAATTTCACCAAGAACCAAATTCTTACCATCACTAGGTCAAGCACCTACAACTGTACAAACCCTTCACTCGATCTGAACTATCCATCATTCAT AGCATTCTACAACAAGAATGTAACAACAGTTATAACTCAAGTTTATCAGAGAGTAGTGACAAATGTAGGTGGAGCTGCTACGTATAAAGTGAAGGTAACT GCACCAAAGGGCTCAAACGTCACAGTCTGGCCAGAGACTTTGGTTTTCGGGAAGAAGTATGAGCAACAGCAATATTCAATCAAGATTACGTATCCAAGCA ATCACGATGGTAAAGTTTCATATGGCTCAATTGTCTGGACGGACGAAAGTGGATCACATACTGTAAGGAGCCCTATTGTTGTGACACCAAGTTCAGGCAA CTAA
AA sequence Show only first row Show all	>Lus10018720 pacid=23176233 polypeptide=Lus10018720 locus=Lus10018720.g ID=Lus10018720.BGIv1.0 annot-version=v1.0 MEGYSSKVKMQQQYYSSPCLFFIGCFLLSTTLHATSKPIANELSTYIVHLDPSFRPKMFTTHSQWHSSIISSVKTSTNNPHNSHFLYSYHNALHGFSAVL SRLELQTLEDLPGSLVLASWTPNYFTAVVGQNILLSGELFNLISGTSMACPHASGVAALLKGAHPEWSHAAIRSAMMTTATTLDNTRKPIKDEGQNLTDA SPLAMGAGHIMPNKALDPGLIDDATPQNYVSLLCSLNFTKNQILTITRSSTYNCTNPSLDLNYPSFIAFYNKNVTTVITQVYQRVVTNVGGAATYKVKVT APKGSNVTVWPETLVFGKKYEQQQYSIKITYPSNHDGKVSYGSIVWTDESGSHTVRSPIVVTPSSGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Lus10018720 [exp]	0	1
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10030244 [exp]	2.6	0.8067
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10009231 [exp]	3.5	0.7451
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10030750 [exp]	7.7	0.7452
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10015860 [exp]	9.9	0.7119
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10040851 [exp]	11.2	0.7691
					Lus10022880 [exp]	12.7	0.7600
AT2G18960		OST2, PMA, AHA1	PLASMA MEMBRANE PROTON ATPASE,...		Lus10028202 [exp]	13.0	0.7140
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10042047 [exp]	20.2	0.7486
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Lus10024073 [exp]	21.0	0.7039
					Lus10007590 [exp]	33.2	0.6719

Compare expression of checked genes

Lus10018720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.