Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 528 / 7e-178 ARA12 Subtilase family protein (.1) AT3G14240 527 / 4e-177 Subtilase family protein (.1) AT2G05920 522 / 1e-175 Subtilase family protein (.1) AT4G34980 514 / 3e-172 SLP2 subtilisin-like serine protease 2 (.1) AT3G14067 500 / 9e-167 Subtilase family protein (.1) AT5G67090 493 / 1e-164 Subtilisin-like serine endopeptidase family protein (.1) AT5G51750 470 / 5e-155 ATSBT1.3 subtilase 1.3 (.1) AT1G04110 467 / 7e-154 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G04160 442 / 2e-144 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59100 434 / 9e-142 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024814 [exp] 1416 / 0 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10027891 [exp] 601 / 0 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10002392 [exp] 597 / 0 AT5G67360 530 / 3e-178 Subtilase family protein (.1) Lus10001130 [exp] 578 / 0 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10002393 [exp] 576 / 0 AT5G67360 450 / 9e-148 Subtilase family protein (.1) Lus10009748 [exp] 575 / 0 AT5G67090 601 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10024815 [exp] 553 / 0 AT5G67090 543 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10013187 [exp] 526 / 1e-176 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10009365 [exp] 525 / 2e-176 AT5G67090 637 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G026600 [exp] 1043 / 0 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.009G100500 [exp] 665 / 0 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.002G124500 [exp] 593 / 0 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026700 [exp] 593 / 0 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026500 [exp] 585 / 0 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.007G045100 [exp] 581 / 0 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.004G173900 [exp] 546 / 0 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.009G133400 [exp] 545 / 0 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.003G071800 [exp] 542 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.001G163600 [exp] 539 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10018721 pacid=23176281 polypeptide=Lus10018721 locus=Lus10018721.g ID=Lus10018721.BGIv1.0 annot-version=v1.0 ATGGAGAAAAACAACTTCTCATCTCTCCTTCCATTCCAGGCCTTGCTGCTGTGTCTTCTGATAATCGTATTGACAGTCGCAAATGCGAGGACGTCCGTCC ATGATGAACACCAGACCTACATTATCCATATCGACCCTTACCATAAGCCAGCCTCTTTCCCAACCCATAATTCTTGGCATAGGTCCCTTCTCCGATCACT CTCAGAACCTGCTGACGACGATGAAATGTTGTTGTATTCTTACAGCCATGTTATGCATGGATTTACAGCGAGGCTAACCCCTTCTCAACTTGCTGAAATT GAGAGATCACCAGCCCATGTTGGCACGTTCCGAGAAACATTTGGAAAGCTCTTCACCACGCGCAGTCCTAGCTTCTTGGGTCTCAGACATTACTCTGGCT TATGGCCAACTGCTAACTATGGAGAAGGAACCATCATCGGACTGATTGATTCAGGGATTTGGCCAGAGAGCGAGAGCTTTCACGACAAAGGAATGCCACC AGTGCCAAAGAGATGGAAGGGGAAGTGCGAAGAGCACCAAACATTCAGGGCTTCTTCCTGCAACAAGAAGCTAATTGGAGCTCAGTCTTTCAGCAGAGGA ATCATAGCTGCAGGTAAAACAATTTCTCCCGACTACAACTCAACACGAGACCTTTCAGGCCACGGGACACACACAGCCTCCACAGCAGCAGGCAATTTCG TCCTTGGAGTGAGTCATTTCGGATATGCAAAAGGTACGGCAAGAGGGGTTGCTCCACGAGCCCACATTGCCATGTACAAAGTCCTCTTCGCTTTAGACAC GCAGCAATCCGCTGCCAGCGATGTGCTGGCTGGCATGGACCAAGCAATTGCAGATGGTGTAGACATAATGTCAATATCCATCGGCTTCGAACATGTACCT TACTATGAAGATGTAATAGCCATAGCTTCCTTTTCAGCAATCCAGAAAGGGATATTCGTGGTGGCTGCAGCCGGAAATGATGGTGGTTACAATGCAACTT ACAGTGGAGCACCATGGATCACAACAGTCGGAGCTGGCACCCTTGATCGCAGTTTCATTGCGAAGCTGACCCTGCCGAATGGGGTGGAAATTAGTGGACA TTCATATTACCCTCAAGATATCTATGCAACCGATGTACCTTTATACTACGGTAAACATGATAAGAAGAAAGCCACTTGCTACTATTCATCACTGAATCGC TCAGAAGTTCGAGGGAAGATAGTGCTTTGCGACAACAGCACAGACATTGCGCTACAAGGTCAGATCGCAGAGCTTCAGAAAGCAGGAGCTTACGGTGGGA TATTCATGACTGATTGGTCATTGTCATTGCTACAGCCAGATGAATACACCATTCCGGGCCTCGTTCTGACAACGAACGACGGCGAACTGGTGAGGAAATA CGCCACCGCTGCCAGCACAGGCAAAGCAAAAGTGAAGAGCCTGAAATTCAAATTCACGAATACAAGGGTGAAACCAACTCCTCAAGTGGCCGATTTCTCT TCTAGAGGGCCCGATCCGATCAATCCGAACATTCTGAAACCGGACATTATTGCTCCCGGAGACGATATTTTGGCAGCCGTGTCGCCGCAGAATCCGTACA TGTCGCTCGGAGAATACAATCTGGTGGCAGATTACGCATTCCTCTCCGGCACATCGATGGCGACGCCGCATGTAGCCGGAGTGGCAGCGATGCTGAAAGC GATCCATCCGGGATGGGGCCCGGCGGGGATAAGATCTGCTCTCATGACCACAGCCTATACCCTAGACAACACCGGCCAAGTATTCACAGACAAATTCTCT GGACTGCCCACCACCCCGCTGGATTTCGGAGCCGGGCACATCGACCCGAACAGAGCCATGGATCCGGGTCTCATCTTCGACTTGAATGCTCAGGATTACA TCGATCACTTGTGCGGGGAAAGCTATACCAAGAAGCAAATGACGGCTATTCTGAGACAGCGGGAGTGGAACTGCAGCCGGGAAGTAACTGATCTGAACTA TCCGTCCCTTACTGCAGTATTCATTGGCGAATCTAGGGCTCCGAGAAGTAAGAAATTCAGCAGGACGGTAACGAACGTGGGAGACGAAAGGTCCGTTTAC CAAGCGACGCTGGTGGAAGTTCCGCGGTGGATGAGGATCCGAGTTGAGCCAAGTAAGCTGTCGTTTCGTGAAAGATACGAGACTAAAAAATTTACAGTGA GTGTGGATGTTGACAAAGATTCTCCGGCGGTGGTTTACAGCTTTCTGAAGTGGATGGATCAACACAGCCATGTAGTTTCAAGCCCCATTGTGGCGGTGAC CCTGTAG
AA sequence Show only first row Show all	>Lus10018721 pacid=23176281 polypeptide=Lus10018721 locus=Lus10018721.g ID=Lus10018721.BGIv1.0 annot-version=v1.0 MEKNNFSSLLPFQALLLCLLIIVLTVANARTSVHDEHQTYIIHIDPYHKPASFPTHNSWHRSLLRSLSEPADDDEMLLYSYSHVMHGFTARLTPSQLAEI ERSPAHVGTFRETFGKLFTTRSPSFLGLRHYSGLWPTANYGEGTIIGLIDSGIWPESESFHDKGMPPVPKRWKGKCEEHQTFRASSCNKKLIGAQSFSRG IIAAGKTISPDYNSTRDLSGHGTHTASTAAGNFVLGVSHFGYAKGTARGVAPRAHIAMYKVLFALDTQQSAASDVLAGMDQAIADGVDIMSISIGFEHVP YYEDVIAIASFSAIQKGIFVVAAAGNDGGYNATYSGAPWITTVGAGTLDRSFIAKLTLPNGVEISGHSYYPQDIYATDVPLYYGKHDKKKATCYYSSLNR SEVRGKIVLCDNSTDIALQGQIAELQKAGAYGGIFMTDWSLSLLQPDEYTIPGLVLTTNDGELVRKYATAASTGKAKVKSLKFKFTNTRVKPTPQVADFS SRGPDPINPNILKPDIIAPGDDILAAVSPQNPYMSLGEYNLVADYAFLSGTSMATPHVAGVAAMLKAIHPGWGPAGIRSALMTTAYTLDNTGQVFTDKFS GLPTTPLDFGAGHIDPNRAMDPGLIFDLNAQDYIDHLCGESYTKKQMTAILRQREWNCSREVTDLNYPSLTAVFIGESRAPRSKKFSRTVTNVGDERSVY QATLVEVPRWMRIRVEPSKLSFRERYETKKFTVSVDVDKDSPAVVYSFLKWMDQHSHVVSSPIVAVTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10018721 [exp]	0	1
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021938 [exp]	5.6	0.8647
AT1G79910			Regulator of Vps4 activity in ...		Lus10011455 [exp]	9.0	0.8320
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10016097 [exp]	9.1	0.8591
					Lus10017937 [exp]	13.1	0.8240
AT2G34930			disease resistance family prot...		Lus10006947 [exp]	15.0	0.8099
AT3G50150			Plant protein of unknown funct...		Lus10010065 [exp]	17.5	0.8214
AT1G17930			Aminotransferase-like, plant m...		Lus10033313 [exp]	18.8	0.7045
AT3G14240			Subtilase family protein (.1)		Lus10024814 [exp]	25.0	0.8200
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10041794 [exp]	25.5	0.8202
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10005113 [exp]	25.7	0.8002

Compare expression of checked genes

Lus10018721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.