Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02630 566 / 0 Protein kinase superfamily protein (.1) AT1G01540 549 / 0 Protein kinase superfamily protein (.1.2) AT4G01330 543 / 0 Protein kinase superfamily protein (.1.2) AT4G34500 452 / 2e-156 Protein kinase superfamily protein (.1) AT3G59110 448 / 1e-153 Protein kinase superfamily protein (.1) AT2G42960 441 / 2e-151 Protein kinase superfamily protein (.1) AT5G18500 427 / 5e-146 Protein kinase superfamily protein (.1.2) AT3G17420 422 / 4e-144 GPK1 glyoxysomal protein kinase 1 (.1) AT1G56720 418 / 4e-142 Protein kinase superfamily protein (.1.2.3) AT1G09440 414 / 4e-141 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024813 [exp] 815 / 0 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10041593 [exp] 551 / 0 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036386 [exp] 514 / 8e-180 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012664 [exp] 505 / 2e-178 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1) Lus10007919 [exp] 507 / 3e-177 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10001423 [exp] 438 / 1e-149 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10042324 [exp] 448 / 2e-148 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10020747 [exp] 434 / 2e-148 AT3G59110 737 / 0.0 Protein kinase superfamily protein (.1) Lus10040459 [exp] 431 / 4e-148 AT4G34500 549 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G026100 [exp] 649 / 0 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 539 / 0 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G139500 [exp] 513 / 4e-180 AT4G02630 477 / 2e-166 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 468 / 7e-162 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 464 / 3e-160 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.005G003300 [exp] 461 / 5e-159 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 454 / 3e-156 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G059000 [exp] 442 / 2e-151 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 438 / 6e-150 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001600 [exp] 432 / 5e-148 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10018722 pacid=23176230 polypeptide=Lus10018722 locus=Lus10018722.g ID=Lus10018722.BGIv1.0 annot-version=v1.0 ATGTCGAGCTCTTCGTCTCTGAACAATGAGCTGTCGAAGAAGACATCAATTTTCGGGTTTCGATTATGGGTGGTGGTGGGTTTCTGCGTCGGAGCTGCTA TAGTGATTGTCCTATTCCTAATCTCACTCTGGCTCACATCAAAGCGCTACCGAAGGAGAAGAAGAAGGAAGAATGATATTCCTCACCTCCAATTCAAGTT GCCGTCTCCCATTAACAACAACCCGACAATCCCAAATGTCTCCAAGGAGATATCGGAGATCCGGGTCGACCCGACGCCTCCTGACCTCAAGCTTTTGAAC CCGAACCCCGACCCGGAAACGGAAACCGGCCCTGTTCCTCGTCAGGACGAGCATCTGCATCAACATCACAGCCCTGTTTCCTCTGCTTCGAGGAACAGAA TTCAGTTCGAAATCGGCAAGGACCACCGGATTTCTTACCCGGAAAGGGCTGGTAATAGCGGGTCGGGTCCTCGGTCCGGTGACCAGGGGAGTAGTGGAAT GACGGTGCCGGAGGTTTCACATTTGGGTTGGGGACATTGGTATACACTGAGGGAGCTGGAGTTGTCTACTAATGAGTTTGCTGACGAAAATGTGATTGGG GAAGGTGGTTATGGGATTGTTTACCTTGGTGTTCTGGAGGATAAGACTACAGTTGCGGTTAAAAATCTACTAAATAACAGGGGTCAAGCTGAGAAAGAGT TCAAGGTTGAAGTGGAGGCAATTGGACGGGTACGGCATAAAAATTTGGTGAGATTGTTAGGTTATTGTGCTGAAGGTGCTCACAGGATGCTTGTTTATGA GTATGTTGATAATGGGAACTTAGAGCAATGGCTTCATGGTGAGGTTGGCCCCAGCAGCCCTCTCACATGGGAGATTCGGATGAATGTCATAATCGGAACT GCAAAAGGGCTAACTTACTTGCATGAAGGGCTTGAGCCGAAAGTGGTGCATCGTGATATCAAATCAAGCAACATTTTGCTTGATAAACAGTGGAATCCAA AAGTCTCTGACTTTGGTTTGGCAAAACTTTTGGGATCAGAGAGTAGTTACGTCACCACAAGAGTGATGGGTACATTTGGGTATGTGGCTCCAGAGTATGC TAGTACGGGCATGTTGAATGAAAGAAGTGATGTGTACAGTTTTGGAATCCTTCTCATGGAAGTCATTTCCGGAAGAAACCCTGTCGATTACAGCCGCCCT CAGGGAGAGGTGAACCTTGTAGAATGGCTTAAGACAATGGTGACAAATAGAAATGCAGACGGAGTTTTGGATCCTAGGTTACCAGAGAAACCCTCTTCAA GAGCACTGAAACGTGCTCTTTTAGTAGCTCTCCGCTGCGTGGATCCAAACGCTCAAAAGAGGCCGAAGATGGGGCATGTGATCCATATGCTGGAGGCTGA CGACTTCCCATTTCGCGATGATCGTAGGACAAGAACTGATAGGCATGTAATGGAGCCCGGTGACAGCAGTGGGTACGAAAGCGGTGCCCCAAAAAACAGA TCAATGTGGAGAAAACCTGAACCAGAGGACCGGTAA
AA sequence Show only first row Show all	>Lus10018722 pacid=23176230 polypeptide=Lus10018722 locus=Lus10018722.g ID=Lus10018722.BGIv1.0 annot-version=v1.0 MSSSSSLNNELSKKTSIFGFRLWVVVGFCVGAAIVIVLFLISLWLTSKRYRRRRRRKNDIPHLQFKLPSPINNNPTIPNVSKEISEIRVDPTPPDLKLLN PNPDPETETGPVPRQDEHLHQHHSPVSSASRNRIQFEIGKDHRISYPERAGNSGSGPRSGDQGSSGMTVPEVSHLGWGHWYTLRELELSTNEFADENVIG EGGYGIVYLGVLEDKTTVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGEVGPSSPLTWEIRMNVIIGT AKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSESSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILLMEVISGRNPVDYSRP QGEVNLVEWLKTMVTNRNADGVLDPRLPEKPSSRALKRALLVALRCVDPNAQKRPKMGHVIHMLEADDFPFRDDRRTRTDRHVMEPGDSSGYESGAPKNR SMWRKPEPEDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02630			Protein kinase superfamily pro...		Lus10018722 [exp]	0	1
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10014163 [exp]	7.5	0.8390
AT4G27280			Calcium-binding EF-hand family...		Lus10033753 [exp]	12.6	0.8312
AT5G48290			Heavy metal transport/detoxifi...		Lus10025181 [exp]	16.2	0.8278
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10001902 [exp]	16.9	0.8230
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10019455 [exp]	20.0	0.7601
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10021370 [exp]	21.0	0.8082
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10017050 [exp]	21.2	0.8131
AT2G23780			RING/U-box superfamily protein...		Lus10016796 [exp]	24.0	0.8115
AT1G70740			Protein kinase superfamily pro...		Lus10003711 [exp]	24.7	0.7273
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010238 [exp]	25.0	0.8138

Compare expression of checked genes

Lus10018722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.