Plant FIBer expression Database

Lus10018723 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024812
[exp]
72 / 4e-16 AT1G49770 156 / 6e-46 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G025900
[exp]
55 / 6e-10 AT1G49770 138 / 9e-39 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Potri.001G305100
[exp]
38 / 0.001 AT1G49770 180 / 1e-54 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00010 HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence
>Lus10018723 pacid=23176223 polypeptide=Lus10018723 locus=Lus10018723.g ID=Lus10018723.BGIv1.0 annot-version=v1.0
ATGGAGGTGATGATCAAGTCGCGTAACTCGAGCTCGAATAGCCTGGTGGGTAGTATGGAACCAACTCCTGCGACTACCGAGGAGGCCAAGGTGGGGAAGA
AGAGGAGTTCAAAGGCAGCTTCGTCTTCGAAGAAGAATCACGACGACATCGGAGGGGATGATGATAATCAATCGGAGCAACAAGTTCATATATGGACAGA
GAGGGAGAGGAGGAAGAGGATGAGGACTATGTTCACTAATCTTCAGGCCTTGCTTCCCCAACTTCCTTCCAAGGCAGGAGCAAGATGTAGCAGCCAGTTT
CCAGAATCATTGTCTGTGGAGGATACATTCAAGCTAGCTGCTGGAGAAATGAATTTGTGGCTCTTGTCCTGTTGA
AA sequence
>Lus10018723 pacid=23176223 polypeptide=Lus10018723 locus=Lus10018723.g ID=Lus10018723.BGIv1.0 annot-version=v1.0
MEVMIKSRNSSSNSLVGSMEPTPATTEEAKVGKKRSSKAASSSKKNHDDIGGDDDNQSEQQVHIWTERERRKRMRTMFTNLQALLPQLPSKAGARCSSQF
PESLSVEDTFKLAAGEMNLWLLSC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G49770 bHLH ZOU, RGE1, bHLH... ZHOUPI, RETARDED GROWTH OF EMB... Lus10018723
[exp]
0 1
AT1G12780 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERAS... Lus10002246
[exp]
3.5 0.9766
AT1G10070 ATBCAT-2 branched-chain amino acid tran... Lus10028247
[exp]
4.4 0.9774
AT1G63800 UBC5 ubiquitin-conjugating enzyme 5... Lus10036372
[exp]
4.9 0.9759
AT1G21000 PLATZ transcription factor fam... Lus10000952
[exp]
6.7 0.9742
AT1G12780 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERAS... Lus10029572
[exp]
7.5 0.9757
AT5G23750 Remorin family protein (.1.2) Lus10001477
[exp]
8.8 0.9454
AT1G10600 AMSH2 associated molecule with the S... Lus10030613
[exp]
10.0 0.9641
AT1G49770 bHLH ZOU, RGE1, bHLH... ZHOUPI, RETARDED GROWTH OF EMB... Lus10024812
[exp]
10.1 0.9398
AT5G49360 ATBXL1, BXL1 beta-xylosidase 1 (.1) Lus10016858
[exp]
10.2 0.9729
AT4G32480 Protein of unknown function (D... Lus10011174
[exp]
11.3 0.9726

Lus10018723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.