Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36930 126 / 2e-34 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67110 104 / 1e-27 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G09530 92 / 2e-21 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT2G46970 82 / 4e-18 bHLH PIL1, bHLH124 phytochrome interacting factor 3-like 1 (.1) AT2G20180 81 / 1e-17 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT2G24260 80 / 2e-17 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 78 / 7e-17 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 77 / 8e-17 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G00050 77 / 2e-16 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G62090 71 / 3e-14 bHLH PIF6, PIL2 PHYTOCHROME-INTERACTING FACTOR 6, phytochrome interacting factor 3-like 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024811 [exp] 284 / 4e-96 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011899 [exp] 92 / 2e-21 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10022833 [exp] 92 / 3e-21 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10009261 [exp] 88 / 5e-20 AT4G36930 102 / 7e-24 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038020 [exp] 88 / 6e-20 AT4G36930 105 / 1e-24 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029805 [exp] 88 / 7e-20 AT3G59060 163 / 7e-45 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) Lus10020727 [exp] 86 / 4e-19 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10015734 [exp] 83 / 2e-18 AT4G00050 138 / 6e-37 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003471 [exp] 80 / 2e-17 AT4G00050 129 / 8e-34 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G124400 [exp] 199 / 4e-63 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G025800 [exp] 194 / 3e-61 AT4G36930 148 / 1e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G139700 [exp] 125 / 7e-34 AT4G36930 171 / 2e-49 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G001800 [exp] 98 / 1e-23 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.013G001300 [exp] 97 / 6e-23 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.002G252800 [exp] 89 / 2e-20 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Potri.014G111400 [exp] 87 / 1e-19 AT2G46970 131 / 3e-33 phytochrome interacting factor 3-like 1 (.1) Potri.002G143300 [exp] 87 / 1e-19 AT4G00050 278 / 2e-89 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G055400 [exp] 82 / 5e-18 AT2G43010 177 / 6e-50 phytochrome interacting factor 4 (.1.2) Potri.005G207200 [exp] 80 / 3e-17 AT2G43010 171 / 1e-47 phytochrome interacting factor 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018724 pacid=23176282 polypeptide=Lus10018724 locus=Lus10018724.g ID=Lus10018724.BGIv1.0 annot-version=v1.0 ATGTCTTGGATCTCATGCGCAGGGGCGAGGGCTTGCGAATTGAGGAGTTACTTGCGTTGGAAGAGAGGATTGGCAACGTCAACACTGGACTACGAAGAGA CCATAGTTAATCGACTCAAGCAACGGACATATTCTGCTGGATTGGGAACATGCAACGCCGAGACAGAACCATGCTGCGTTTGCCAGAGGAGGAGAAGCAG GATCAACGAGAAAATGAAGGCTTTACAGAATCTAATCCCCAATTCTAACAAGACGGATAAAGCATCCATGCTGGATGAAGCAATTGAATACTTGAAGCAG CTTCAGCTGCAAGTACAGATGTTGACATTGAGGAATGGATTAAGCTTGCATCCAATGTGCTTACCACCTGGAGTATTACAGCCTATGCAACTGCCTCTAA CAGGATTGAGCTTTGAAGAAGGGAATACTAATGGACTGTTGACTGACAGCACCTTAACAGCAGGCTCCTTTTCTGCAACTGAACAACCCCATCTCCAAAC TGGTCATAACCTTCCTCATAATCAGTGTACAGTGTCGAATGGTCAACCTTCTGGAACAAACTTAACCGCTTCAGAGAACCCTTTTCCCTTTGAACAACCT TATCAGGTTCTATATGAATCTCTTCATCTAACCTCATCTGGAAAGGTGAAAATTTGA
AA sequence Show only first row Show all	>Lus10018724 pacid=23176282 polypeptide=Lus10018724 locus=Lus10018724.g ID=Lus10018724.BGIv1.0 annot-version=v1.0 MSWISCAGARACELRSYLRWKRGLATSTLDYEETIVNRLKQRTYSAGLGTCNAETEPCCVCQRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQ LQLQVQMLTLRNGLSLHPMCLPPGVLQPMQLPLTGLSFEEGNTNGLLTDSTLTAGSFSATEQPHLQTGHNLPHNQCTVSNGQPSGTNLTASENPFPFEQP YQVLYESLHLTSSGKVKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10018724 [exp]	0	1
AT3G02645			Plant protein of unknown funct...		Lus10026964 [exp]	3.0	0.8366
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10015489 [exp]	7.5	0.8217
AT1G77580			Plant protein of unknown funct...		Lus10042719 [exp]	9.6	0.8251
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10017944 [exp]	13.0	0.7858
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10014592 [exp]	13.7	0.7935
AT5G48385			FRIGIDA-like protein (.1)		Lus10004132 [exp]	14.5	0.7978
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	19.0	0.8206
AT1G74160			unknown protein		Lus10017857 [exp]	19.2	0.7955
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10034932 [exp]	19.4	0.8230
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10012992 [exp]	21.2	0.7255

Compare expression of checked genes

Lus10018724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.