Plant FIBer expression Database

Lus10018725 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42940 146 / 3e-37 RING/U-box superfamily protein (.1)
AT1G45180 127 / 8e-31 RING/U-box superfamily protein (.1)
AT2G15530 57 / 3e-08 RING/U-box superfamily protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024810
[exp]
818 / 0 AT5G42940 316 / 4e-98 RING/U-box superfamily protein (.1)
Lus10010036
[exp]
572 / 0 AT5G42940 244 / 2e-71 RING/U-box superfamily protein (.1)
Lus10010372
[exp]
509 / 4e-175 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G124300
[exp]
398 / 4e-131 AT5G42940 377 / 3e-121 RING/U-box superfamily protein (.1)
Potri.009G100100
[exp]
134 / 5e-33 AT4G34040 392 / 5e-127 RING/U-box superfamily protein (.1)
Potri.001G304900
[exp]
113 / 3e-26 AT4G34040 370 / 4e-118 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10018725 pacid=23176165 polypeptide=Lus10018725 locus=Lus10018725.g ID=Lus10018725.BGIv1.0 annot-version=v1.0
ATGCAAGGGCAGAGGGGTATAATTGGCTCCCTGCCGGAGACTTTGGACTTTGACCATGGAGCAGCGTCAGGTACTGCTGTCATGGACCAGCAACTTTGCT
GGAACAATCTGCGAAATCCAGCCGAAGAGCGATTTCCAAACTTCATGTTGTCCCCTGTTCACTCGAATACCTATGTGAATCCTGTTGATCATGAACGCCA
GAACTTGAGTCGGTGGAGGCTAGGGGAGCCAAGTTCTCGTAATGCTAGAAGTGATAGGAATCGTGATAAGCAGAAAATGGAAAATGGATCATCATCCTCA
GCAGGAGCAGGCATGCCTGCTACTACTAGTTCAAGGTTTGAAGAGAGGCTTCCTGAACCGACACATACCCTTTCATTGAATAGTGTTGATGTCAATGCAC
ATTTTGGGCACAGTTCCAATGCCAATGGATTTCCCCAGAATCTAAACTTGAATGCAGATTTTGTCGGCCAAGGTGATGATCGTGGATACTTTAGGGAAGA
CGAAAGTAGACCTGGTTGTTCTTTGGATGGGCGTCGTCAATCATGCAAAAGAAAAGCTGTGGAAGGACATGGCCAGTCCTCTATGAATGCTAGTTCTAGC
TTGTTTCAGCATCCAGAGGGTAGTGCATGGGCCGGTGTTCCTCCTCTTGGGGTTGGCAGAAGTCTGAGTATATCAGCTCCACATGAGCAGGTGAATCCTC
GGCTTGGATTAGGTTTGAGAAGACTAGGTACTGAAGGTAATGCTGAGCCCATGGCATCTGGAAGCTCTCGGAGAAACTTCCGTTTGAGGATACATCCTTC
ACATCAAGAATCTGTTCCTTCTTCATTATTTTCTTCTGGAACTGCTGTTAGGAATAACAATTTCCAATCTTCCCATCACTCAAGGCGTATTCCAGTTGAT
CAGTCCTTGGAGTTTATGTCAGCATTAACTGCAGACGTGTCACTCCCTCAATCTCAGCCAGCTGTTCTTCCTGTTCCGGCTTTGCCACAAAATGCGCGAC
CATTTAGGTGGAGTGAAAGCTCCAGCTCCAGCTCAAGAGCTGGTAGCTCATCCGGTCCTGTAGATTTGGCTGAGGGTGAGGAGGTAGGCTCAAGAAGTAG
CATTAGACCACATTTATGGGAACATCCTATGTTTGTACCTGCCACAGAGTTGAGAACTTCTGCTAGGAATCCAACAAGTAGGAATGTGGTTGGTGGGAGT
ATGGGAGTTCCAGGAAGTGTTTCTGCTGCATCTCGGAGCGGCTCAAATTCTGGTGTTAATTTGTCAGCTCCAACTTGGGTTCCTCATCAAAATACTTCTA
GAAACTCAAGGAGACTGGCTGAGTATGTTCGTCGGTCGATGTTTGCTTCTGCTGGCAGTGAGCCTGGAGTTCAGAGCGGTAATCATCCTTATGCTGAAGA
GATGGTTCCACCATCTGGAACCAGTAACCAGGCCCATCATCGATCTCATCCAAGATCGGCAGCATCTGTAGACAGACAGAGTGATGGTGTACTTAGAATC
CCTTATCCGTTACAAAGCTTTAGTGCTTCTGGTGAAGGTCGAAGCAGGCTTGTTTCGGAGGTTTGTTGGAACACTCGTTTCTATGGTGCATTAGACCCCC
CTTAG
AA sequence
>Lus10018725 pacid=23176165 polypeptide=Lus10018725 locus=Lus10018725.g ID=Lus10018725.BGIv1.0 annot-version=v1.0
MQGQRGIIGSLPETLDFDHGAASGTAVMDQQLCWNNLRNPAEERFPNFMLSPVHSNTYVNPVDHERQNLSRWRLGEPSSRNARSDRNRDKQKMENGSSSS
AGAGMPATTSSRFEERLPEPTHTLSLNSVDVNAHFGHSSNANGFPQNLNLNADFVGQGDDRGYFREDESRPGCSLDGRRQSCKRKAVEGHGQSSMNASSS
LFQHPEGSAWAGVPPLGVGRSLSISAPHEQVNPRLGLGLRRLGTEGNAEPMASGSSRRNFRLRIHPSHQESVPSSLFSSGTAVRNNNFQSSHHSRRIPVD
QSLEFMSALTADVSLPQSQPAVLPVPALPQNARPFRWSESSSSSSRAGSSSGPVDLAEGEEVGSRSSIRPHLWEHPMFVPATELRTSARNPTSRNVVGGS
MGVPGSVSAASRSGSNSGVNLSAPTWVPHQNTSRNSRRLAEYVRRSMFASAGSEPGVQSGNHPYAEEMVPPSGTSNQAHHRSHPRSAASVDRQSDGVLRI
PYPLQSFSASGEGRSRLVSEVCWNTRFYGALDPP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G42940 RING/U-box superfamily protein... Lus10018725
[exp]
0 1
AT4G29380 AtVPS15 Arabidopsis thaliana vacuolar ... Lus10011134
[exp]
2.2 0.9134
AT4G29380 AtVPS15 Arabidopsis thaliana vacuolar ... Lus10043037
[exp]
3.5 0.9029
AT4G36630 EMB2754 EMBRYO DEFECTIVE 2754, Vacuola... Lus10014310
[exp]
4.9 0.8834
AT1G58200 MSL3 MSCS-like 3 (.1.2) Lus10012733
[exp]
5.0 0.8687
AT2G02360 ATPP2-B10 phloem protein 2-B10 (.1) Lus10007926
[exp]
6.0 0.8426
AT5G64220 CAMTA Calmodulin-binding transcripti... Lus10003405
[exp]
6.5 0.9003
AT4G33240 FAB1A FORMS APLOID AND BINUCLEATE CE... Lus10038127
[exp]
13.4 0.8619
AT1G13940 Plant protein of unknown funct... Lus10030419
[exp]
13.4 0.8549
AT1G06410 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTH... Lus10029258
[exp]
13.9 0.8331
AT2G46620 P-loop containing nucleoside t... Lus10035073
[exp]
14.4 0.8200

Lus10018725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.